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Issues list

long running time for index.idx for snDropSeq by kb ref
#351 opened Aug 1, 2022 by jingliu1700 updated Aug 1, 2022
2
Will 10x 5' paired-end pseudoalignment be supported?
#287 opened Nov 3, 2020 by marencc updated Jun 16, 2022
7
kallisto_linux-v0.48.0.tar.gz: "GLIBCXX_3.4.20 not found" failure on CentOS 7.9
#347 opened Jun 14, 2022 by HenrikBengtsson updated Jun 14, 2022
Request: Document est_counts in manual
#346 opened May 5, 2022 by outpaddling updated May 5, 2022
Suggestion: verify input for kallisto index
#345 opened Apr 12, 2022 by anmej updated Apr 12, 2022
kallisto quant synthax error when trying to generate log file for multiqc
#290 opened Nov 25, 2020 by dscdscdscs updated Mar 31, 2022
8
Running kallisto(bustools) on amplicon-based (targeted panel) BD Rhapsody scRNA-seq data
#342 opened Feb 28, 2022 by ahmadalajami updated Mar 30, 2022
10
Mapping Sample Tags to Cellular Barcodes
#343 opened Mar 24, 2022 by ahmadalajami updated Mar 29, 2022
5
running kallisto quant with custom target gene's index
#341 opened Feb 23, 2022 by mjko1210 updated Feb 23, 2022
1
Invalid segment Error when building reference of the rat genome
#340 opened Feb 5, 2022 by kim-fehl updated Feb 6, 2022
3
Multimapping reads in Kallisto
#339 opened Jan 31, 2022 by kikegoni updated Jan 31, 2022
2
eQTLs
#337 opened Jan 17, 2022 by afadda1 updated Jan 17, 2022
allele-specific expression
#335 opened Jan 11, 2022 by afadda1 updated Jan 12, 2022
2
Error: unspliced. bus has no BUS records
#298 opened Feb 25, 2021 by gabriellayi updated Dec 30, 2021
2
Does -gtf support gff3?
#332 opened Nov 24, 2021 by outpaddling updated Nov 29, 2021
4
Transcriptome ID mismatch in abundance files
#116 opened Aug 10, 2016 by jynewberg updated Nov 10, 2021
2
Count matrix with and without lammano workflow
#318 opened Aug 5, 2021 by njbernstein updated Sep 7, 2021
3
How to construct and index file with extended TTS
#322 opened Aug 18, 2021 by bweatherbee updated Aug 19, 2021
1
not-yet-implemented 'Matrix' subsetting
#238 opened Dec 2, 2019 by hmassalha updated Apr 28, 2021
2
Account for coverage non-uniformity between exons (Exome-capture RNAseq)
#300 opened Mar 25, 2021 by avkitex updated Mar 25, 2021
uninformative error when using -s 0
#96 opened Jan 4, 2016 by mschilli87 updated Mar 17, 2021
6
--genomebam not showing read alignment in IGV
#258 opened Mar 29, 2020 by jtoker updated Mar 15, 2021
2
Recommendation for paired-end reads associated with a single-end file
#296 opened Feb 22, 2021 by smoretti updated Feb 22, 2021
Kallisto: Estimated average fragment length is zero
#295 opened Feb 18, 2021 by Jayesh-Kumar-Sundaram updated Feb 18, 2021
Give helpful error message when no reads align feature
#84 opened Oct 16, 2015 by pimentel updated Feb 9, 2021
1
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