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251 Open 740 Closed
251 Open 740 Closed
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Issues list

Funannotate train failing when using mysql due to socket error
#1056 opened Jul 13, 2024 by monkfromouterspace
1
Issues with multiple transcripts: MEROPs, BUSCO, PFAM and dbCAN/CAZyme annotations missing for T2 transcripts from final annotation file
#1055 opened Jul 12, 2024 by calizilla
URL update needed for the latest MEROPs database file
#1054 opened Jul 11, 2024 by calizilla
2
Augustus installation error ( When I use the make command it gives this error)
#1053 opened Jul 7, 2024 by pvshekar
Parsing uniprot blast hits
#1052 opened Jun 26, 2024 by SnuniKVC
linux/arm64 docker image
#1050 opened Jun 23, 2024 by JLSteenwyk
2
genemark probuild takes too long
#1048 opened Jun 12, 2024 by sqwwww
funannotate test failing at predict step
#1047 opened Jun 10, 2024 by pwkooij
6
question about the busco version in funannotate
#1046 opened Jun 10, 2024 by dingxm
How to fix a local variable in gff3
#1044 opened May 21, 2024 by yumi-nakadera
4
funannotate remote does not recognise predict_results folder
#1043 opened May 20, 2024 by ydanylko
7
Evidence modeler has failed, exiting
#1042 opened May 17, 2024 by genbuf
1
When running funannotate compare, comparison of 2 species succeeds but comparison of 3 species fails
#1041 opened May 17, 2024 by liuyca1
Funannotate compare
#1040 opened May 14, 2024 by danielabermeo8
1
CMD ERROR: diamond makedb --in /tmp/augustus.training.proteins.fa --db /tmp/aug_training.dmnd
#1039 opened May 10, 2024 by dingcaojin
1
Run InterProScan with funannotate-docker
#1037 opened Apr 29, 2024 by hanhan124
isoforms in gff3
#1036 opened Apr 29, 2024 by Nitin123-4
1
How to run funannotate setup local，configure Funannotate to use the locally downloaded database files instead of re-downloading them?
#1035 opened Apr 29, 2024 by zengqd
How to check the full-length genes from the final annotation.
#1034 opened Apr 26, 2024 by Nitin123-4
funannotate update ERROR
#1033 opened Apr 22, 2024 by ChuanzhengWei
Annotate command drops AttributeError: 'SimpleLocation' object has no attribute 'nofuzzy_start' error
#1032 opened Apr 22, 2024 by UmerFarooq17
3
TypeError: '>' not supported between instances of 'NoneType' and 'int'
#1031 opened Apr 19, 2024 by ad010902
2
How can I include the contig from the mitochondrial genome?
#1030 opened Apr 18, 2024 by Antonio-Sanpedro
GENMARK
#1029 opened Apr 17, 2024 by ad010902
2
Database is not properly configured, re-run funannotate setup, busco_seed_species
#1028 opened Apr 17, 2024 by ad010902
1
ProTip! no:milestone will show everything without a milestone.