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Issues list

funannotate predict errors
#1072 opened Oct 15, 2024 by liuyca1 updated Oct 29, 2024
12
Evidence modeler has failed, exiting
#1042 opened May 17, 2024 by genbuf updated Oct 29, 2024
5
Funannotate fix each run give new model genes to must have fixed
#1077 opened Oct 28, 2024 by Malokidz updated Oct 28, 2024
BUSCO-mediated training failure in 1.8.17, but not in 1.8.15
#1071 opened Oct 7, 2024 by JWDebler updated Oct 26, 2024
11
Funannotate compare stuck at the Proteinortho step for 2 days. The command is at sleep.
#1076 opened Oct 24, 2024 by akshayoo updated Oct 24, 2024
1
busco_db Installation Issue
#1075 opened Oct 24, 2024 by xianlord93 updated Oct 24, 2024
Could not locate command line parameters file
#776 opened Sep 5, 2022 by LandiMi2 updated Oct 23, 2024
17
Augustus Training Error: Missing ExonModel File and UnboundLocalError in Funannotate v1.8.17 Despite Pretrained Species Use
#1069 opened Sep 20, 2024 by kalonji08 updated Oct 22, 2024
5
Bedtools intersect error at the end of funannote predict
#1074 opened Oct 22, 2024 by jaylward2 updated Oct 22, 2024
Another test data failure after fresh conda install
#1073 opened Oct 22, 2024 by amcomeau updated Oct 22, 2024
SignalP v6?
#650 opened Oct 10, 2021 by Dikaryotic updated Oct 16, 2024
18
funannotate predict fails with test and with real data: "Not enough gene models ... to train Augustus"
#742 opened Jun 30, 2022 by IanDMedeiros updated Oct 14, 2024
17
"funannotate remote -m phobius" stops processing my file
#1070 opened Oct 4, 2024 by alpargata97 updated Oct 4, 2024
Setup of funannotate databases fails
#1058 opened Jul 25, 2024 by ekg123 updated Sep 24, 2024
3
installing databases failed
#1066 opened Sep 2, 2024 by jacob-israel updated Sep 24, 2024
4
cannot install funannotate, Executing transaction allthe time.
#1065 opened Aug 31, 2024 by winteraatt updated Sep 17, 2024
1
Funannotate compare
#1067 opened Sep 11, 2024 by Niohuruzh updated Sep 11, 2024
funannotate-predict.py: error: unrecognized arguments: --stopCodonExcludedFromCDS=False
#1064 opened Aug 28, 2024 by wangpeng-design updated Aug 29, 2024
3
Unique proteins from Funannotate compare
#1063 opened Aug 26, 2024 by manjumoorthy95 updated Aug 26, 2024
UnboundLocalError: local variable 'values1' referenced before assignment
#983 opened Nov 18, 2023 by bgruening updated Aug 26, 2024
3
Funannotate Installation : How to configure funannotate app find the Trimmomatic program?
#1061 opened Aug 21, 2024 by jacob-israel updated Aug 23, 2024
5
funannotate compare fails at diamond
#1062 opened Aug 22, 2024 by jsimba-99 updated Aug 22, 2024
2
Funannotate train failing when using mysql due to socket error
#1056 opened Jul 13, 2024 by monkfromouterspace updated Aug 21, 2024
2
URL update needed for the latest MEROPs database file
#1054 opened Jul 11, 2024 by calizilla updated Aug 19, 2024
5
Species is recognized as "anidulans"? question
#920 opened May 31, 2023 by lukaskon updated Aug 19, 2024
6
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