![:octocat: :octocat:](https://github.githubassets.com/images/icons/emoji/octocat.png)
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Zhejiang University
- Hangzhou, China
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19:05
(UTC +08:00) - https://orcid.org/0000-0002-1928-3878
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Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
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scCrossTalk Public
Infer and visualize cell-cell communication for single-cell RNA-seq data
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SpaTalk Public
Forked from ZJUFanLab/SpaTalkKnowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
R GNU General Public License v3.0 UpdatedJun 14, 2024 -
NNLM Public
Forked from linxihui/NNLMNonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
R Other UpdatedMay 14, 2024 -
MouseLR-atlas Public
A single-cell spatial-temporal transcriptomic atlas of normal and fibrotic liver regeneration
scrna-seq spatially-resolved-transcriptomics liver-regeneration liver-fibrosis spatial-temporal-analysis stereo-seqR GNU General Public License v3.0 UpdatedNov 13, 2023 -
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SiGra Public
Forked from QSong-github/SiGraSingle-cell spatial elucidation through image-augmented graph transformer
Jupyter Notebook MIT License UpdatedJul 7, 2023 -
miRTalk Public
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
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github-readme-stats Public
Forked from anuraghazra/github-readme-stats⚡ Dynamically generated stats for your github readmes
JavaScript MIT License UpdatedMar 22, 2023 -
Beautiful-Visualization-with-python Public
Forked from Easy-Shu/Beautiful-Visualization-with-Pythonpython数据可视化之美
Jupyter Notebook UpdatedFeb 2, 2023 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedOct 24, 2022 -
PPMS Public
Forked from SrivastavaLab-ICL/PPMSPri-miRNA profiling for single-cell RNA-seq data
Shell UpdatedAug 4, 2022 -
Giotto Public
Forked from drieslab/GiottoSingle-cell spatial analysis toolbox
R MIT License UpdatedMay 10, 2022 -
CellChat Public
Forked from sqjin/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R GNU General Public License v3.0 UpdatedMay 6, 2022 -
SpatialKidney Public
Forked from BiomedicalMachineLearning/SpatialKidney -
toolbox Public
Forked from emreg00/toolboxToolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
Python UpdatedApr 2, 2022 -
multinichenetr Public
Forked from saeyslab/multinichenetrR GNU General Public License v3.0 UpdatedMar 23, 2022 -
spatial-datasets Public
Forked from drieslab/spatial-datasetsoverview of spatial datasets
R MIT License UpdatedSep 14, 2021 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedOct 23, 2020 -
lx-music-desktop Public
Forked from lyswhut/lx-music-desktop一个基于 electron 的音乐软件
Vue Apache License 2.0 UpdatedOct 23, 2020 -
listen1_desktop Public
Forked from listen1/listen1_desktopone for all free music in china (Windows, Mac, Linux desktop)
JavaScript MIT License UpdatedOct 18, 2020 -
CCL-cGPS-1 Public
Forked from ZJUFanLab/CCL-cGPSCCL-cGPS: a clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
R GNU General Public License v3.0 UpdatedJul 16, 2020 -
clash_for_windows_pkg Public
Forked from usaweili/clash_for_windows_pkgA Windows/macOS GUI based on Clash
UpdatedJul 11, 2020 -
CellTalkDB Public
Forked from ZJUFanLab/CellTalkDBA manually curated database of literature-supported ligand-receptor interactions in human and mouse
R GNU General Public License v3.0 UpdatedJun 29, 2020 -
SingleCellSignalR_v1 Public
Forked from SCA-IRCM/SingleCellSignalR_v1R package
HTML UpdatedMay 28, 2020 -
nichenetr Public
Forked from saeyslab/nichenetrNicheNet: predict active ligand-target links between interacting cells
R UpdatedMay 26, 2020 -
garnett Public
Forked from cole-trapnell-lab/garnettAutomated cell type classification
R MIT License UpdatedMay 13, 2020 -
DeepSort Public
Forked from ZJUFanLab/scDeepSortReference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
Python UpdatedMay 10, 2020 -
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SingleR Public
Forked from dviraran/SingleRSingleR: Single-cell RNA-seq cell types Recognition (legacy version)
HTML GNU General Public License v3.0 UpdatedApr 12, 2020