Commits

Commits on Mar 28, 2023

Merge branch 'owkin:main' into main
mikelove
committedMar 28, 2023
BUG dispersion prior variance (owkin#105 )

mikelove
and
BorisMuzellec
committedMar 28, 2023
refactor: remove unused num_genes variable from fit_dispersion_prior
BorisMuzellec
committedMar 28, 2023
dispersion prior variance
mikelove
committedMar 28, 2023

Commits on Mar 27, 2023

REL set version to 0.3.1 (owkin#104 )
BorisMuzellec
committedMar 27, 2023

Commits on Mar 24, 2023

BUG fix size factor fitting when zero in each gene (owkin#98 )

BorisMuzellec
and
maikia
committedMar 24, 2023

Commits on Mar 23, 2023

Update README.md
BorisMuzellec
committedMar 23, 2023
DOCS Add logo (owkin#103 )
BorisMuzellec
committedMar 23, 2023

Commits on Mar 22, 2023

ENH multi-level design support (owkin#101 )

BorisMuzellec
and
maikia
committedMar 22, 2023
ENH Variance stabilizing transformation (owkin#99 )
BorisMuzellec
committedMar 22, 2023

Commits on Mar 15, 2023

ENH allow initializing a DeseqDataSet from an AnnData object (owkin#96 )
BorisMuzellec
committedMar 15, 2023

Commits on Mar 6, 2023

Update README.md
BorisMuzellec
committedMar 6, 2023

Commits on Mar 3, 2023

Update README.md
BorisMuzellec
committedMar 3, 2023

Commits on Mar 2, 2023

docs: add anndata requirement to readme
BorisMuzellec
committedMar 2, 2023
rel: set version to 0.3.0 (owkin#93 )
BorisMuzellec
committedMar 2, 2023
BUG fix replacement counts when there are un-replaceable samples (owkin#90 )
BorisMuzellec
committedMar 2, 2023

Commits on Mar 1, 2023

fix: remove double negation causing genewise dispersions to be fit twice (owkin#92 )
BorisMuzellec
committedMar 1, 2023

Commits on Feb 27, 2023

BUG correct typo in fit_dispersion_prior (owkin#91 )
BorisMuzellec
committedFeb 27, 2023
BUG typo in attribute name
BorisMuzellec
committedFeb 27, 2023

Commits on Feb 23, 2023

Update README.md
BorisMuzellec
committedFeb 23, 2023
DOC Improve parameter type display (owkin#87 )
BorisMuzellec
committedFeb 23, 2023

Commits on Feb 21, 2023

DOC fix broken RTD example gallery (owkin#83 )

BorisMuzellec
and
maikia
committedFeb 21, 2023
typo
BorisMuzellec
committedFeb 21, 2023

Commits on Feb 20, 2023

ENH Support type hinting using mypy (owkin#68 )

committedFeb 20, 2023
ENH implement a getter for normalized counts (owkin#79 )

BorisMuzellec
and
mandreux-owkin
committedFeb 20, 2023

Commits on Feb 16, 2023

ENH AnnData integration (owkin#66 )
BorisMuzellec
committedFeb 16, 2023
MAINT code owners (owkin#82 )
mandreux-owkin
committedFeb 16, 2023
CI add python 3.9-3.11 to CI(owkin#81 )
maikia
committedFeb 16, 2023

Commits on Feb 15, 2023

CI update workflow (owkin#80 )
maikia
committedFeb 15, 2023

Commits on Feb 14, 2023

TST Unit test for nb_nll (owkin#75 )

mandreux-owkin
and
BorisMuzellec
committedFeb 14, 2023

Commits on Feb 13, 2023

CI Basic code coverage (owkin#74 )
mandreux-owkin
committedFeb 13, 2023
DOC development roadmap (owkin#24 )
BorisMuzellec
committedFeb 13, 2023
BUG set dds.replaced to False if cohorts don't have enough samples (owkin#70 )
BorisMuzellec
committedFeb 13, 2023

Commits on Feb 10, 2023

Moving docs' requirements into the actual docs' requirements file (owkin#72 )
mandreux-owkin
committedFeb 10, 2023

Commits on Jan 30, 2023

DEP removing the notebooksdirectory (owkin#67 )
BorisMuzellec
committedJan 30, 2023