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ENH: Move hi-ml and fastMRI to PyPI packages #752

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merged 9 commits into from
Jun 23, 2022
Merged

ENH: Move hi-ml and fastMRI to PyPI packages #752

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4829a27
🔥 💥 Remove submodules
peterhessey Jun 22, 2022
4fb4440
➕ Add packages to primary dependencies
peterhessey Jun 22, 2022
2dc1a58
📌 ⬆️ Upgrade python to 3.8 and lock
peterhessey Jun 22, 2022
bc87859
✅ Fix fastMRI test
peterhessey Jun 22, 2022
9dcd534
💚 ✅ Fix tests and CI workflows
peterhessey Jun 22, 2022
76d08e7
🏷️ Fix MyPy and Flake8 issues
peterhessey Jun 22, 2022
1a36f46
⬆️ Update windows dependencies
peterhessey Jun 22, 2022
32e5649
📝 Add fastMRI reference
peterhessey Jun 22, 2022
26274bf
⚰️ Remove references to old submodules
peterhessey Jun 23, 2022
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📝 Add fastMRI reference
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@peterhessey
peterhessey committed Jun 22, 2022
commit 32e56494fe47a755292f7e5fee415d37a55361c7
2 changes: 2 additions & 0 deletions Tests/ML/configs/fastmri_random.py
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Expand Up @@ -23,6 +23,8 @@
from InnerEye.ML.lightning_container import LightningContainer


# Copied and modified from the FastMRI codebase.
# https://github.com/facebookresearch/fastMRI/blob/main/tests/create_temp_data.py
def create_temp_data(path: Path) -> Dict[str, Any]:
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rg = np.random.default_rng(seed=1234)
max_num_slices = 15
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