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ENH: Remove cucim + change lock script line endings #750

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Jun 21, 2022
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ENH: Remove cucim + change lock script line endings #750

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59 changes: 29 additions & 30 deletions TestSubmodule/environment.yml
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,20 +16,20 @@ dependencies:
- ffmpeg=4.2.2=h20bf706_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- gmp=6.2.1=h2531618_2
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9e=h7f8727e_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- libedit=3.1.20210910=h7f8727e_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=11.2.0=h1234567_0
- libgomp=11.2.0=h1234567_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libidn2=2.3.2=h7f8727e_0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.37=hbc83047_0
- libstdcxx-ng=11.2.0=h1234567_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h2818925_1
- libunistring=0.9.10=h27cfd23_0
Expand All @@ -54,7 +54,7 @@ dependencies:
- readline=7.0=h7b6447c_5
- setuptools=61.2.0=py37h06a4308_0
- sqlite=3.33.0=h62c20be_0
- tk=8.6.11=h1ccaba5_1
- tk=8.6.12=h1ccaba5_0
- torchvision=0.11.1=py37_cu113
- typing_extensions=4.1.1=pyh06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
Expand All @@ -63,11 +63,11 @@ dependencies:
- zlib=1.2.12=h7f8727e_2
- zstd=1.5.2=ha4553b6_0
- pip:
- absl-py==1.0.0
- absl-py==1.1.0
- adal==1.2.7
- aiohttp==3.8.1
- aiosignal==1.2.0
- alembic==1.7.7
- alembic==1.8.0
- ansiwrap==0.8.4
- applicationinsights==0.11.10
- argon2-cffi==21.3.0
Expand All @@ -76,12 +76,12 @@ dependencies:
- asynctest==0.13.0
- attrs==21.4.0
- azure-common==1.1.28
- azure-core==1.24.0
- azure-core==1.24.1
- azure-graphrbac==0.61.1
- azure-identity==1.7.0
- azure-mgmt-authorization==0.61.0
- azure-mgmt-containerregistry==10.0.0
- azure-mgmt-core==1.3.0
- azure-mgmt-core==1.3.1
- azure-mgmt-datafactory==1.1.0
- azure-mgmt-keyvault==9.3.0
- azure-mgmt-resource==12.1.0
Expand Down Expand Up @@ -114,15 +114,14 @@ dependencies:
- charset-normalizer==2.0.12
- click==8.1.3
- cloudpickle==1.6.0
- colorama==0.4.4
- colorama==0.4.5
- commonmark==0.9.1
- conda-merge==0.1.5
- contextlib2==21.6.0
- coverage==6.4
- coverage==6.4.1
- cryptography==3.3.2
- cucim==21.10.1
- cycler==0.11.0
- databricks-cli==0.16.6
- databricks-cli==0.17.0
- dataclasses-json==0.5.2
- debugpy==1.6.0
- decorator==5.1.1
Expand All @@ -149,14 +148,14 @@ dependencies:
- grpcio==1.46.3
- gunicorn==20.1.0
- h5py==2.10.0
- humanize==4.1.0
- humanize==4.2.0
- idna==3.3
- imageio==2.15.0
- importlib-metadata==4.11.4
- importlib-resources==5.7.1
- importlib-resources==5.8.0
- iniconfig==1.1.1
- innereye-dicom-rt==1.0.3
- ipykernel==6.13.0
- ipykernel==6.15.0
- ipython==7.31.1
- ipython-genutils==0.2.0
- ipywidgets==7.7.0
Expand All @@ -168,14 +167,14 @@ dependencies:
- jmespath==0.10.0
- joblib==0.16.0
- jsonpickle==2.2.0
- jsonschema==4.5.1
- jsonschema==4.6.0
- jupyter==1.0.0
- jupyter-client==6.1.5
- jupyter-console==6.4.3
- jupyter-core==4.10.0
- jupyterlab-pygments==0.2.2
- jupyterlab-widgets==1.1.0
- kiwisolver==1.4.2
- kiwisolver==1.4.3
- lightning-bolts==0.4.0
- llvmlite==0.34.0
- mako==1.2.0
Expand All @@ -191,21 +190,21 @@ dependencies:
- mlflow-skinny==1.26.1
- monai==0.6.0
- more-itertools==8.13.0
- msal==1.17.0
- msal==1.18.0
- msal-extensions==0.3.1
- msrest==0.6.21
- msrest==0.7.1
- msrestazure==0.6.4
- multidict==6.0.2
- mypy==0.910
- mypy-extensions==0.4.3
- nbclient==0.6.3
- nbclient==0.6.4
- nbconvert==6.5.0
- nbformat==5.4.0
- ndg-httpsclient==0.5.1
- nest-asyncio==1.5.5
- networkx==2.6.3
- nibabel==3.2.2
- notebook==6.4.11
- nibabel==4.0.1
- notebook==6.4.12
- numba==0.51.2
- numpy==1.19.1
- oauthlib==3.2.0
Expand All @@ -224,7 +223,7 @@ dependencies:
- pluggy==0.13.1
- portalocker==2.4.0
- prometheus-client==0.14.1
- prometheus-flask-exporter==0.20.1
- prometheus-flask-exporter==0.20.2
- prompt-toolkit==3.0.29
- protobuf==3.20.1
- psutil==5.7.2
Expand Down Expand Up @@ -253,11 +252,11 @@ dependencies:
- pytz==2022.1
- pywavelets==1.3.0
- pyyaml==6.0
- pyzmq==23.0.0
- qtconsole==5.3.0
- pyzmq==23.2.0
- qtconsole==5.3.1
- qtpy==2.1.0
- querystring-parser==1.2.4
- requests==2.27.1
- requests==2.28.0
- requests-oauthlib==1.3.1
- rich==10.13.0
- rpdb==0.1.6
Expand All @@ -275,7 +274,7 @@ dependencies:
- six==1.15.0
- smmap==5.0.0
- soupsieve==2.3.2.post1
- sqlalchemy==1.4.36
- sqlalchemy==1.4.37
- sqlparse==0.4.2
- stopit==1.1.2
- stringcase==1.2.0
Expand All @@ -295,14 +294,14 @@ dependencies:
- torchmetrics==0.6.0
- tornado==6.1
- tqdm==4.64.0
- traitlets==5.2.1.post0
- traitlets==5.3.0
- typed-ast==1.4.3
- typing-inspect==0.7.1
- umap-learn==0.5.2
- urllib3==1.26.7
- wcwidth==0.2.5
- webencodings==0.5.1
- websocket-client==1.3.2
- websocket-client==1.3.3
- werkzeug==2.1.2
- widgetsnbextension==3.6.0
- wrapt==1.14.1
Expand Down
59 changes: 29 additions & 30 deletions environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,20 +16,20 @@ dependencies:
- ffmpeg=4.2.2=h20bf706_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- gmp=6.2.1=h2531618_2
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9e=h7f8727e_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- libedit=3.1.20210910=h7f8727e_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=11.2.0=h1234567_0
- libgomp=11.2.0=h1234567_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libidn2=2.3.2=h7f8727e_0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.37=hbc83047_0
- libstdcxx-ng=11.2.0=h1234567_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h2818925_1
- libunistring=0.9.10=h27cfd23_0
Expand All @@ -54,7 +54,7 @@ dependencies:
- readline=7.0=h7b6447c_5
- setuptools=61.2.0=py37h06a4308_0
- sqlite=3.33.0=h62c20be_0
- tk=8.6.11=h1ccaba5_1
- tk=8.6.12=h1ccaba5_0
- torchvision=0.11.1=py37_cu113
- typing_extensions=4.1.1=pyh06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
Expand All @@ -63,11 +63,11 @@ dependencies:
- zlib=1.2.12=h7f8727e_2
- zstd=1.5.2=ha4553b6_0
- pip:
- absl-py==1.0.0
- absl-py==1.1.0
- adal==1.2.7
- aiohttp==3.8.1
- aiosignal==1.2.0
- alembic==1.7.7
- alembic==1.8.0
- ansiwrap==0.8.4
- applicationinsights==0.11.10
- argon2-cffi==21.3.0
Expand All @@ -76,12 +76,12 @@ dependencies:
- asynctest==0.13.0
- attrs==21.4.0
- azure-common==1.1.28
- azure-core==1.24.0
- azure-core==1.24.1
- azure-graphrbac==0.61.1
- azure-identity==1.7.0
- azure-mgmt-authorization==0.61.0
- azure-mgmt-containerregistry==10.0.0
- azure-mgmt-core==1.3.0
- azure-mgmt-core==1.3.1
- azure-mgmt-datafactory==1.1.0
- azure-mgmt-keyvault==9.3.0
- azure-mgmt-resource==12.1.0
Expand Down Expand Up @@ -114,15 +114,14 @@ dependencies:
- charset-normalizer==2.0.12
- click==8.1.3
- cloudpickle==1.6.0
- colorama==0.4.4
- colorama==0.4.5
- commonmark==0.9.1
- conda-merge==0.1.5
- contextlib2==21.6.0
- coverage==6.4
- coverage==6.4.1
- cryptography==3.3.2
- cucim==21.10.1
- cycler==0.11.0
- databricks-cli==0.16.6
- databricks-cli==0.17.0
- dataclasses-json==0.5.2
- debugpy==1.6.0
- decorator==5.1.1
Expand All @@ -149,14 +148,14 @@ dependencies:
- grpcio==1.46.3
- gunicorn==20.1.0
- h5py==2.10.0
- humanize==4.1.0
- humanize==4.2.0
- idna==3.3
- imageio==2.15.0
- importlib-metadata==4.11.4
- importlib-resources==5.7.1
- importlib-resources==5.8.0
- iniconfig==1.1.1
- innereye-dicom-rt==1.0.3
- ipykernel==6.13.0
- ipykernel==6.15.0
- ipython==7.31.1
- ipython-genutils==0.2.0
- ipywidgets==7.7.0
Expand All @@ -168,14 +167,14 @@ dependencies:
- jmespath==0.10.0
- joblib==0.16.0
- jsonpickle==2.2.0
- jsonschema==4.5.1
- jsonschema==4.6.0
- jupyter==1.0.0
- jupyter-client==6.1.5
- jupyter-console==6.4.3
- jupyter-core==4.10.0
- jupyterlab-pygments==0.2.2
- jupyterlab-widgets==1.1.0
- kiwisolver==1.4.2
- kiwisolver==1.4.3
- lightning-bolts==0.4.0
- llvmlite==0.34.0
- mako==1.2.0
Expand All @@ -191,21 +190,21 @@ dependencies:
- mlflow-skinny==1.26.1
- monai==0.6.0
- more-itertools==8.13.0
- msal==1.17.0
- msal==1.18.0
- msal-extensions==0.3.1
- msrest==0.6.21
- msrest==0.7.1
- msrestazure==0.6.4
- multidict==6.0.2
- mypy==0.910
- mypy-extensions==0.4.3
- nbclient==0.6.3
- nbclient==0.6.4
- nbconvert==6.5.0
- nbformat==5.4.0
- ndg-httpsclient==0.5.1
- nest-asyncio==1.5.5
- networkx==2.6.3
- nibabel==3.2.2
- notebook==6.4.11
- nibabel==4.0.1
- notebook==6.4.12
- numba==0.51.2
- numpy==1.19.1
- oauthlib==3.2.0
Expand All @@ -224,7 +223,7 @@ dependencies:
- pluggy==0.13.1
- portalocker==2.4.0
- prometheus-client==0.14.1
- prometheus-flask-exporter==0.20.1
- prometheus-flask-exporter==0.20.2
- prompt-toolkit==3.0.29
- protobuf==3.20.1
- psutil==5.7.2
Expand Down Expand Up @@ -253,11 +252,11 @@ dependencies:
- pytz==2022.1
- pywavelets==1.3.0
- pyyaml==6.0
- pyzmq==23.0.0
- qtconsole==5.3.0
- pyzmq==23.2.0
- qtconsole==5.3.1
- qtpy==2.1.0
- querystring-parser==1.2.4
- requests==2.27.1
- requests==2.28.0
- requests-oauthlib==1.3.1
- rich==10.13.0
- rpdb==0.1.6
Expand All @@ -275,7 +274,7 @@ dependencies:
- six==1.15.0
- smmap==5.0.0
- soupsieve==2.3.2.post1
- sqlalchemy==1.4.36
- sqlalchemy==1.4.37
- sqlparse==0.4.2
- stopit==1.1.2
- stringcase==1.2.0
Expand All @@ -295,14 +294,14 @@ dependencies:
- torchmetrics==0.6.0
- tornado==6.1
- tqdm==4.64.0
- traitlets==5.2.1.post0
- traitlets==5.3.0
- typed-ast==1.4.3
- typing-inspect==0.7.1
- umap-learn==0.5.2
- urllib3==1.26.7
- wcwidth==0.2.5
- webencodings==0.5.1
- websocket-client==1.3.2
- websocket-client==1.3.3
- werkzeug==2.1.2
- widgetsnbextension==3.6.0
- wrapt==1.14.1
Expand Down
1 change: 0 additions & 1 deletion primary_deps.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,6 @@ dependencies:
- cloudpickle <2.0.0,>=1.1.0
- conda-merge==0.1.5
- cryptography==3.3.2
- cucim==21.10.1; platform_system=="Linux"
- dataclasses-json==0.5.2
- docker==4.3.1
- flake8==3.8.3
Expand Down