Skip to content
This repository has been archived by the owner on Mar 21, 2024. It is now read-only.

Enable tiling non-PANDA WSI datasets #621

Merged
merged 16 commits into from
Dec 16, 2021
Merged

Enable tiling non-PANDA WSI datasets #621

Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
16 commits
Select commit Hold shift + click to select a range
2507b05
Add basic dataset and environment changes
dccastro Dec 14, 2021
861c1e7
Add loading/preproc utils
dccastro Dec 14, 2021
b8e7f52
Back-up PANDA tiling scripts
dccastro Dec 14, 2021
cd7af1b
Refactor and generalise tiling scripts
dccastro Dec 14, 2021
163169a
Remove Azure scripts
dccastro Dec 14, 2021
ad14227
Add test WSI file
dccastro Dec 14, 2021
7c071b9
Add preprocessing tests
dccastro Dec 14, 2021
d1fbfef
Update changelog
dccastro Dec 14, 2021
9ffda4a
Add Linux condition for cuCIM in environment.yml
dccastro Dec 15, 2021
6df3fc6
Merge remote-tracking branch 'origin/main' into dacoelh/tiling
dccastro Dec 15, 2021
7f4cbd9
Merge branch 'main' into dacoelh/tiling
dccastro Dec 16, 2021
fa5ec34
Use PANDA instead of TCGA-PRAD in test
dccastro Dec 16, 2021
f599e61
Leave TcgaPradDataset as an example
dccastro Dec 16, 2021
abe7b4a
Fix skipped InnerEye dataset tests
dccastro Dec 16, 2021
a551a9b
Create and test mock slides dataset
dccastro Dec 16, 2021
a56a599
Remove Tests/ML/datasets from pytest discovery
dccastro Dec 16, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Add test WSI file
  • Loading branch information
@dccastro
dccastro committed Dec 14, 2021
commit ad14227bab20e80fdc804ef7b05fa684fa258a9d
1 change: 1 addition & 0 deletions .gitattributes
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,3 +15,4 @@
*.dcm filter=lfs diff=lfs merge=lfs -text
*.zip filter=lfs diff=lfs merge=lfs -text
*.jpg filter=lfs diff=lfs merge=lfs -text
*.tiff filter=lfs diff=lfs merge=lfs -text
vale-salvatelli marked this conversation as resolved.
Show resolved Hide resolved
3 changes: 3 additions & 0 deletions Tests/ML/histopathology/test_data/panda_wsi_example.tiff
View file
Open in desktop
Git LFS file not shown