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Enable tiling non-PANDA WSI datasets #621

Merged
merged 16 commits into from
Dec 16, 2021
Merged

Enable tiling non-PANDA WSI datasets #621

merged 16 commits into from
Dec 16, 2021

Commits on Dec 14, 2021

  1. Add basic dataset and environment changes

    @dccastro
    dccastro committed Dec 14, 2021
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  2. Add loading/preproc utils

    @dccastro
    dccastro committed Dec 14, 2021
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  3. Back-up PANDA tiling scripts

    @dccastro
    dccastro committed Dec 14, 2021
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  4. Refactor and generalise tiling scripts

    @dccastro
    dccastro committed Dec 14, 2021
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  5. Remove Azure scripts

    @dccastro
    dccastro committed Dec 14, 2021
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  6. Add test WSI file

    @dccastro
    dccastro committed Dec 14, 2021
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  7. Add preprocessing tests

    @dccastro
    dccastro committed Dec 14, 2021
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  8. Update changelog

    @dccastro
    dccastro committed Dec 14, 2021
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Commits on Dec 15, 2021

  1. Add Linux condition for cuCIM in environment.yml

    @dccastro
    dccastro committed Dec 15, 2021
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  2. Merge remote-tracking branch 'origin/main' into dacoelh/tiling

    @dccastro
    dccastro committed Dec 15, 2021
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Commits on Dec 16, 2021

  1. Merge branch 'main' into dacoelh/tiling

    @dccastro
    dccastro committed Dec 16, 2021
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  2. Use PANDA instead of TCGA-PRAD in test

    @dccastro
    dccastro committed Dec 16, 2021
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  3. Leave TcgaPradDataset as an example

    @dccastro
    dccastro committed Dec 16, 2021
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  4. Fix skipped InnerEye dataset tests

    @dccastro
    dccastro committed Dec 16, 2021
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  5. Create and test mock slides dataset

    @dccastro
    dccastro committed Dec 16, 2021
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  6. Remove Tests/ML/datasets from pytest discovery

    @dccastro
    dccastro committed Dec 16, 2021
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