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Issues: mehta-lab/microDL

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4 Open 33 Closed
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Issues list

Allowing user specified masks preprocessing get data ready for training
#126 by smguo was closed Jul 13, 2023 microDL 2.0.0
5
Upgrade to Tensorflow2 keras or Pytorch
#141 by smguo was closed Jul 13, 2023 microDL 2.0.0
4
memory mapping the tiles used for training
#120 by pranathivemuri was closed Apr 21, 2023 microDL 2.0.0
4
[master branch] "tile_image" generate tiles with different sizes when the input image dimension is not the multiple of input tile size
#41 by smguo was closed Oct 4, 2018
4
Branch "Infer_on_large_image":"predict_on_larger_image" in model_inference.py only supports single channel input
#34 by smguo was closed Sep 13, 2018
4
data problem
#212 by Valort-KT was closed Jun 16, 2023
3
Make flat fielding step prior to normalization and before generating frames
#121 by pranathivemuri was closed Jun 16, 2023 microDL 2.0.0
3
inference 2.5D model bug
#138 by JohannaRahm was closed Feb 17, 2022
2
merge data command
#119 by pranathivemuri was closed Jul 13, 2023 microDL 2.0.0
2
Add config parameter checks docs enhancement New feature or request
#62 by jennyfolkesson was closed Jul 13, 2023 microDL 2.0.0
2
intensity.csv
#207 by yingmuzhi was closed Mar 17, 2023
1
z-score
#204 by yingmuzhi was closed Feb 19, 2023
1
z-alignment of different modalities preprocessing get data ready for training
#160 by JohannaRahm was closed Jul 13, 2023 microDL 2.0.0
1
Add test dataset
#144 by JohannaRahm was closed Sep 28, 2022 microDL 1.0.0
1
configuration files need more documentation
#134 by bryantChhun was closed Mar 17, 2022
1
Integration tests are currently not running on travis - port to github
#133 by pranathivemuri was closed Oct 16, 2021
1
Add docstrings to config yaml files
#127 by smguo was closed Sep 9, 2022 microDL 1.0.0
1
Update version of Matplotlib
#122 by smguo was closed Nov 22, 2019
1
Add preprocessing_script tests
#82 by jennyfolkesson was closed May 15, 2019
1
Update inference_tiles to work with new data format
#60 by jennyfolkesson was closed Jun 6, 2019
1
Switch from keras to tf.keras
#59 by jennyfolkesson was closed Dec 8, 2022
1
Branch "Infer_on_large_image": shape mismatch errors when input image dimension is not power of 2
#37 by smguo was closed Feb 21, 2019
1
ImageValidator doesn't accept images with file name format "image_n0_z0.npy"
#25 by smguo was closed Oct 26, 2018
1
Predicted images generated by Inference_script.py don't have the full dimension as the target images
#24 by smguo was closed Sep 13, 2018
1
ModelCheckpoint monitor is train_loss in the config file template
#23 by smguo was closed Sep 10, 2018
1
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