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Issues: mehta-lab/microDL

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Issues list

Testing of pytorch_implementation branch training training and evaluating the models
#175 by Christianfoley was closed Jul 13, 2023 microDL 2.0.0
@mattersoflight @jennyfolkesson
@JohannaRahm @Christianfoley @Soorya19Pradeep
20
Config issues on gunpowder dataloading branch bug Something isn't working
#197 by Christianfoley was closed Jul 13, 2023 microDL 2.0.0
@mattersoflight @Christianfoley
12
Make model architecture compatible with deployment inference using and sharing the models
#214 by ziw-liu was closed Jun 16, 2023
@Christianfoley @ziw-liu
9
Unexpected behavior in model batch prediction? bug Something isn't working inference using and sharing the models training training and evaluating the models
#225 by Christianfoley was closed Apr 25, 2023
@mattersoflight @Christianfoley @ziw-liu
8
Training on gpu-c-1 scratch space
#217 by Soorya19Pradeep was closed Apr 4, 2023
@mattersoflight @ziw-liu
7
register data during preprocessing preprocessing get data ready for training
#185 by mattersoflight was closed Jun 16, 2023
@talonchandler @edyoshikun
6
Runtime error testing lightning pipeline
#227 by Soorya19Pradeep was closed Apr 28, 2023
@mattersoflight @ziw-liu
5
Inference shouldn't use gunpowder inference using and sharing the models
#206 by Soorya19Pradeep was closed Apr 13, 2023
@mattersoflight @Christianfoley @Soorya19Pradeep
5
Inference for gunpowder dataloading
#190 by Christianfoley was closed Feb 17, 2023
@mattersoflight @Soorya19Pradeep
5
Allowing user specified masks preprocessing get data ready for training
#126 by smguo was closed Jul 13, 2023 microDL 2.0.0
5
Masking in gunpowder pipeline preprocessing get data ready for training
#182 by Christianfoley was closed Dec 14, 2022 microDL 2.1.0
@jennyfolkesson @Christianfoley @ziw-liu
4
Upgrade to Tensorflow2 keras or Pytorch
#141 by smguo was closed Jul 13, 2023 microDL 2.0.0
4
memory mapping the tiles used for training
#120 by pranathivemuri was closed Apr 21, 2023 microDL 2.0.0
4
[master branch] "tile_image" generate tiles with different sizes when the input image dimension is not the multiple of input tile size
#41 by smguo was closed Oct 4, 2018
4
Branch "Infer_on_large_image":"predict_on_larger_image" in model_inference.py only supports single channel input
#34 by smguo was closed Sep 13, 2018
4
data problem
#212 by Valort-KT was closed Jun 16, 2023
3
Convert existing tensorflow models to pytorch
#208 by Soorya19Pradeep was closed Mar 10, 2023
@mattersoflight @ziw-liu @Soorya19Pradeep
3
Augmentations
#181 by Christianfoley was closed Nov 22, 2022 microDL 2.1.0
@Christianfoley
3
Add support for Zarr as input format
#140 by smguo was closed Dec 14, 2022 microDL 2.0.0
@jennyfolkesson
3
Make flat fielding step prior to normalization and before generating frames
#121 by pranathivemuri was closed Jun 16, 2023 microDL 2.0.0
3
Metadata Structure inference using and sharing the models training training and evaluating the models
#203 by Christianfoley was closed Apr 13, 2023 microDL 2.0.0
@Christianfoley
2
configs should use channel names and not channel index
#201 by mattersoflight was closed Apr 21, 2023
@Christianfoley @ziw-liu @Soorya19Pradeep
2
Improve masking of fluorescence data in preprocessing
#199 by Soorya19Pradeep was closed Feb 27, 2023
@mattersoflight @Christianfoley @Soorya19Pradeep
2
Flatfielding computation error on gunpowder dataloading branch bug Something isn't working
#198 by Christianfoley was closed Feb 10, 2023 microDL 2.0.0
@Christianfoley @Soorya19Pradeep
2
use click for CLI in microDL 2.0.0
#195 by mattersoflight was closed Jul 13, 2023 microDL 2.0.0
@Christianfoley @ziw-liu
2
ProTip! Exclude everything labeled bug with -label:bug.