Master the command line, in one page

A nextflow pipeline for decontamination of short reads, long reads and contigs

A DSL for data-driven computational pipelines

A flexible pipeline for complete analysis of bacterial genomes

Aggregate results from bioinformatics analyses across many samples into a single report.

The Django Base Site is a Django site that is built using the best Django practices and comes with all the common Django packages that you need to jumpstart your next project.

Jupyter notebook based genomic data visualization toolkit.

Patterns commonly encountered when writing CWL workflows

Manager for multi-container computing environments

Object factory for Django

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

Rich is a Python library for rich text and beautiful formatting in the terminal.

An Emacs framework for the stubborn martian hacker

Oneclient is the Onedata command line interface for mounting distributed virtual filesystem on local machines.

SPAdes Genome Assembler

Create clusters of VMs on the cloud and configure them with Ansible.

Cross-platform ncurses Spotify client written in Rust, inspired by ncmpc and the likes.

The command-line tool for quick, simple deployment and management of Linux dedicated game servers.

Monitor Memory usage of Python code

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Free universal database tool and SQL client

Wallpaper downloader and manager for Linux systems

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

Environment Modules: provides dynamic modification of a user's environment

Common Workflow Language reference implementation

R package for searching, downloading and analysis of EBI MGnify metagenomics data

GFF and GVF specification documents

Cocktail: DRY up your backbone code with mixins

Give your JS App some Backbone with Models, Views, Collections, and Events

GNOME time tracker