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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 942 324

  2. TriPath TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 74 5

  3. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 221 29

  4. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 172 14

  5. TANGLE TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    Python 46 1

  6. PANTHER PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    Jupyter Notebook 41 4

Repositories

Showing 10 of 28 repositories
  • HEST Public

    HEST library (H&E and Spatial Transcriptomics framework)

    mahmoodlab/HEST’s past year of commit activity
    Python 14 MIT 0 0 0 Updated Jun 16, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 221 29 12 1 Updated Jun 15, 2024
  • mmp Public

    Multimodal prototyping for cancer survival prediction (ICML 2024)

    mahmoodlab/mmp’s past year of commit activity
    1 0 0 0 Updated Jun 15, 2024
  • hest-website Public

    Jekyll website for HEST-1k

    mahmoodlab/hest-website’s past year of commit activity
    CSS 2 CC0-1.0 0 0 0 Updated May 31, 2024
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 41 4 0 0 Updated May 21, 2024
  • TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/TANGLE’s past year of commit activity
    Python 46 1 1 0 Updated May 21, 2024
  • Patch-GCN Public

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    mahmoodlab/Patch-GCN’s past year of commit activity
    Python 106 GPL-3.0 29 5 1 Updated May 14, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 74 5 0 0 Updated May 10, 2024
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    mahmoodlab/CLAM’s past year of commit activity
    Python 942 GPL-3.0 324 15 4 Updated Apr 29, 2024
  • CPATH_demographics Public

    Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

    mahmoodlab/CPATH_demographics’s past year of commit activity
    Python 12 2 0 0 Updated Apr 29, 2024
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