Positron, a next-generation data science IDE

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

QC pipeline to inspect your sequences

Params validation plugin for Nextflow pipelines

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

What should perfect bioinformatic tools be like?

Web application to collect and visualise data across multiple MultiQC runs.

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Simple test framework for Nextflow pipelines

Workflow management with Nextflow and nf-core

A organelle de novo genome assembly toolkit

Test data to be used for automated testing with the nf-core pipelines

Aggregate results from bioinformatics analyses across many samples into a single report.

Code and files for the main nf-core website.

Repository to host tool-specific module files for the Nextflow DSL2 community!

Python package with helper tools for the nf-core community.

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

A playground to explore how to implement things in Nextflow and nf-core

Personal template for making and describing how to do reproducible NBIS support projects

Repository containing gitpod configuration for creating and testing bioconda recipes.

A DSL for data-driven computational pipelines