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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Pinned

  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 233 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 60 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    16 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 216 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 198 46

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 289 repositories
  • Earth-Biogenome-Project-pilot Public

    Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 9 GPL-3.0 8 43 (1 issue needs help) 0 Updated Aug 27, 2024
  • workshop-reproducible-research Public

    NBIS/ELIXIR course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 55 CC-BY-4.0 31 1 0 Updated Aug 26, 2024
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 56 41 Updated Aug 26, 2024
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 34 (1 issue needs help) 1 Updated Aug 26, 2024
  • htsget-rs-helm Public

    This repository hosts Helm charts for deploying the rust implementation of htsget

    NBISweden/htsget-rs-helm’s past year of commit activity
    Smarty 0 0 0 0 Updated Aug 23, 2024
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro’s past year of commit activity
    HTML 13 GPL-3.0 6 0 0 Updated Aug 23, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Shell 3 0 0 1 Updated Aug 23, 2024
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Aug 22, 2024
  • assembly-project-template Public template

    This is a template for all assembly projects. Please read the instructions below on how to use it.

    NBISweden/assembly-project-template’s past year of commit activity
    Shell 2 MIT 1 1 1 Updated Aug 21, 2024
  • workshop-epigenomics-RTDs Public

    workshop website on readthedocs

    NBISweden/workshop-epigenomics-RTDs’s past year of commit activity
    16 13 0 0 Updated Aug 21, 2024
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