Stars
Biological foundation modeling from molecular to genome scale
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
Quick start for building MD systems, especially for the 'Swimming' strategy.
Homemade scripts based on protocolGromacs, for automatically md system building.
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
Supplementary code and data to "Improving Attacks on Round-Reduced Speck32/64 Using Deep Learning"
🧑🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
This repository has been integrated in https://github.com/DeepRank/deeprank2
List of papers about Proteins Design using Deep Learning
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
A compilation of deep learning methods for protein design
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
An open-source platform for developing protein models beyond AlphaFold.
Trainable AlphaFold implementation in JAX