Harness LLMs with Multi-Agent Programming

Bringing deck.gl and pydeck into Dash

Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"

Mixture of Gaussian Processes Model for Sparse Longitudinal Data

Medical Image Radiomics Processor

Cell segmentation with deep learning

Visiopharm to QuPath migration scripts

Automatic differentiation through persistence diagrams with PyTorch

SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"

A topological machine learning framework based on PyTorch

Time-series machine learning at scale. Built with Polars for embarrassingly parallel feature extraction and forecasts on panel data.

Python implementation of the Slingshot pseudotime algorithm

Code for implemented models for "Spatial Omics Driven Crossmodal Pretraining Applied to Graph-based Deep Learning for Cancer Pathology Analysis"

FUSION-Navigator visualization of spatially resolved molecular data in histology images.

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices

Papers about explainability of GNNs

Spatial meta-transcriptome analysis pipeline

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Builder and index for PyTorch packages

Convert JSON annotations into YOLO format.

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

🦜🔗 Build context-aware reasoning applications

🤗 Diffusers: State-of-the-art diffusion models for image and audio generation in PyTorch and FLAX.

[MICCAI 2024] Easy diffusion models (optionally with segmentation guidance) for medical images and beyond.

[CVPR 2024] Real-Time Open-Vocabulary Object Detection

Efficient string matching with regular expressions

Fast SHAP value computation for interpreting tree-based models