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@Christensen-Lab-Dartmouth

Christensen-Lab-Dartmouth

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  1. methyLiftover methyLiftover Public

    A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set

    R 16 14

  2. OxyBS OxyBS Public

    Vignette for data processing and use of the fitOxBS function from the OxyBS R package

    R 3 2

Repositories

Showing 10 of 17 repositories
  • Analysis-Example-Codes Public

    R scripts from Ze Zhang often used in DNA methylation analyses. Not the most clean but should be helpful

    Christensen-Lab-Dartmouth/Analysis-Example-Codes’s past year of commit activity
    R 0 2 0 0 Updated Dec 22, 2023
  • MethylCapsNet Public
    Christensen-Lab-Dartmouth/MethylCapsNet’s past year of commit activity
    Python 4 MIT 2 3 0 Updated Mar 26, 2021
  • methyl_capsule_data Public

    Stores data for capsule-related projects

    Christensen-Lab-Dartmouth/methyl_capsule_data’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Nov 9, 2020
  • PCNS_5hmC_06112020 Public

    Measurement of 5hmC in pediatric cns tumors

    Christensen-Lab-Dartmouth/PCNS_5hmC_06112020’s past year of commit activity
    R 1 1 0 0 Updated Jun 11, 2020
  • MethylNet Public

    Modular framework for deep learning predictions on methylation data.

    Christensen-Lab-Dartmouth/MethylNet’s past year of commit activity
    HTML 48 MIT 11 6 0 Updated Jun 2, 2020
  • PyMethylProcess Public

    Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

    Christensen-Lab-Dartmouth/PyMethylProcess’s past year of commit activity
    Python 34 MIT 8 9 0 Updated Feb 11, 2020
  • Normal-breast-5hmC Public
    Christensen-Lab-Dartmouth/Normal-breast-5hmC’s past year of commit activity
    HTML 3 1 0 0 Updated Nov 19, 2019
  • VAE_methylation Public

    VAE methylation analysis using the Tybalt model developed by Way et al.

    Christensen-Lab-Dartmouth/VAE_methylation’s past year of commit activity
    HTML 9 BSD-3-Clause 1 0 0 Updated May 31, 2019
  • VAE_analysis Public

    DNA methylation analysis using VAE

    Christensen-Lab-Dartmouth/VAE_analysis’s past year of commit activity
    Jupyter Notebook 5 1 0 0 Updated Nov 6, 2018
  • CF_Epigenetics Public

    R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"

    Christensen-Lab-Dartmouth/CF_Epigenetics’s past year of commit activity
    R 8 GPL-3.0 3 0 0 Updated Sep 21, 2018
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