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  1. SpatialCorr SpatialCorr Public

    Forked from mbernste/SpatialCorr

    SpatialCorr: Identify gene sets with spatially varying correlation

    Jupyter Notebook

  2. scvi-tools scvi-tools Public

    Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell omics data

    Python

  3. scanpy scanpy Public

    Forked from scverse/scanpy

    Single-cell analysis in Python. Scales to >1M cells.

    Python

  4. MAESTRO MAESTRO Public

    Forked from liulab-dfci/MAESTRO

    Single-cell Transcriptome and Regulome Analysis Pipeline

    C

  5. STRIDE STRIDE Public

    Forked from wanglabtongji/STRIDE

    STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.

    Python

  6. cell2location cell2location Public

    Forked from BayraktarLab/cell2location

    Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

    Python

Repositories

Showing 10 of 16 repositories
  • Giotto Public Forked from drieslab/Giotto

    Single-cell spatial analysis toolbox

    jhuanglabsctools/Giotto’s past year of commit activity
    R 0 MIT 102 0 0 Updated Mar 31, 2022
  • CellTrek Public Forked from navinlabcode/CellTrek
    jhuanglabsctools/CellTrek’s past year of commit activity
    R 0 19 0 0 Updated Mar 21, 2022
  • MASI Public

    Marker assisted single-cell expression data integration

    jhuanglabsctools/MASI’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 15, 2022
  • scMiko Public Forked from NMikolajewicz/scMiko
    jhuanglabsctools/scMiko’s past year of commit activity
    R 0 6 0 0 Updated Mar 15, 2022
  • scvi-tools Public Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell omics data

    jhuanglabsctools/scvi-tools’s past year of commit activity
    Python 0 BSD-3-Clause 344 0 0 Updated Mar 13, 2022
  • scanpy Public Forked from scverse/scanpy

    Single-cell analysis in Python. Scales to >1M cells.

    jhuanglabsctools/scanpy’s past year of commit activity
    Python 0 BSD-3-Clause 586 0 0 Updated Mar 13, 2022
  • cell2location Public Forked from BayraktarLab/cell2location

    Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

    jhuanglabsctools/cell2location’s past year of commit activity
    Python 0 Apache-2.0 55 0 0 Updated Mar 11, 2022
  • SpatialCorr Public Forked from mbernste/SpatialCorr

    SpatialCorr: Identify gene sets with spatially varying correlation

    jhuanglabsctools/SpatialCorr’s past year of commit activity
    Jupyter Notebook 0 MIT 4 0 0 Updated Mar 2, 2022
  • iCellR Public Forked from rezakj/iCellR

    Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

    jhuanglabsctools/iCellR’s past year of commit activity
    R 0 19 0 0 Updated Feb 28, 2022
  • CRC_scRNAseq Public Forked from youqiongye/CRC_scRNAseq
    jhuanglabsctools/CRC_scRNAseq’s past year of commit activity
    R 0 22 0 0 Updated Feb 16, 2022
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