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University of North Carolina
- http:https://www.rubinsteyn.com
- @iskander
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Techniques and numbers for estimating system's performance from first-principles
Self/non-self discrimination as a statistical problem
A toolkit for building Python extensions in Zig.
20+ high-performance LLM implementations with recipes to pretrain, finetune and deploy at scale.
STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint TCRab-peptide input to predict TCRab-peptide specificity.
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Open source code for AlphaFold.
Open Targets evidence normalization and scoring pipeline
Code for the paper "Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer"
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
Structural variant and indel caller for mapped sequencing data
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
ERGO is a deep learing based model for predicting TCR-peptide binding.
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Reference-free variant discovery in large eukaryotic genomes
Quickly search, compare, and analyze genomic and metagenomic data sets.
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection