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@hammerlab

Hammer Lab

We're a lab working to understand and improve the immune response to cancer

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  1. flowdec flowdec Public

    TensorFlow Deconvolution for Microscopy Data

    Jupyter Notebook 86 26

  2. cytokit cytokit Public

    Microscopy Image Cytometry Toolkit

    Jupyter Notebook 114 18

  3. ketrew ketrew Public

    Keep Track of Experimental Workflows

    OCaml 74 10

  4. survivalstan survivalstan Public

    Library of Stan Models for Survival Analysis

    Jupyter Notebook 123 23

  5. prohlatype prohlatype Public

    Probabilistic HLA typing

    OCaml 35 4

  6. pageant pageant Public

    Parallel Genomic Analysis Toolkit

    14 4

Repositories

Showing 10 of 136 repositories
  • ppx_deriving_cmdliner Public

    Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)

    hammerlab/ppx_deriving_cmdliner’s past year of commit activity
    OCaml 96 Apache-2.0 12 12 1 Updated Sep 12, 2023
  • vcf-annotate-polyphen Public

    A tool to annotate human VCF files with PolyPhen2 effect measures

    hammerlab/vcf-annotate-polyphen’s past year of commit activity
    Python 8 Apache-2.0 6 2 3 Updated Dec 26, 2022
  • flusso Public

    FCS (Flow Cytometry Standard) parser and utility

    hammerlab/flusso’s past year of commit activity
    JavaScript 2 Apache-2.0 0 3 7 Updated Dec 9, 2022
  • t-cell-relation-extraction Public

    Literature mining for T cell relations

    hammerlab/t-cell-relation-extraction’s past year of commit activity
    Jupyter Notebook 23 5 7 5 Updated Aug 5, 2022
  • cytokit Public

    Microscopy Image Cytometry Toolkit

    hammerlab/cytokit’s past year of commit activity
    Jupyter Notebook 114 Apache-2.0 18 11 (1 issue needs help) 4 Updated Jul 15, 2022
  • flowdec Public

    TensorFlow Deconvolution for Microscopy Data

    hammerlab/flowdec’s past year of commit activity
    Jupyter Notebook 86 Apache-2.0 26 9 2 Updated Apr 29, 2022
  • genspio Public

    Generate Shell Phrases In OCaml

    hammerlab/genspio’s past year of commit activity
    OCaml 48 Apache-2.0 3 16 0 Updated Dec 15, 2021
  • tcr-transfer Public

    Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs

    hammerlab/tcr-transfer’s past year of commit activity
    HTML 0 Apache-2.0 0 6 1 Updated Nov 30, 2021
  • biokepi Public

    Bioinformatics Ketrew Pipelines

    hammerlab/biokepi’s past year of commit activity
    OCaml 27 Apache-2.0 4 85 1 Updated Nov 14, 2021
  • pileup.js Public

    Interactive in-browser track viewer

    hammerlab/pileup.js’s past year of commit activity
    JavaScript 274 Apache-2.0 64 78 4 Updated Oct 26, 2021
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