With its broad coverage R packages and other tool, it will offer researchers of RNA-seq data an easy access to all the important and relevant analytical steps.

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

Identify and correct invalid gene symbols

The 2023 version of cellPLATO

build-once run-anywhere c library

Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.

Finding gene expression states in scRNA-seq data

Robust longitudinal Differential Expression

Toolkit for reproducible single-cell data analyses

This R package provides an SDK to the Open AI API

R's data.table package extends data.frame:

Parallel, indexed xz compressor

XML dom package for R similar to jdom implemented using Reference Classes

Analyse trackMate output in R

From geospatial to spatial -omics

Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

Spatial Transcriptomics Capture Location Deconvolution

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

Linux kernel source tree

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.

R package implementation of Milo for testing for differential abundance in KNN graphs

Clone of the Bioconductor repository for the batchelor package.

Training cell segmentation models using deep learning

📘 The interactive computing suite for you! ✨

R wrapper for SpatialDE

Spatial analysis of FISH data

Control and installation of a cyclic smFISH robot