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relocate to hetio/medline & enable LFS
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dhimmel committed Apr 9, 2021
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*.xz filter=lfs diff=lfs merge=lfs -text
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# Computing term cooccurrence in MEDLINE

This repository quantifies term cooccurrence in MEDLINE. It's designed for computing the cooccurence of all pairs between two MeSH termsets. The repository computes MEDLINE cooccurences for the Rephetio hetnet. See the corresponding [Thinklab discussion](https://doi.org/10.15363/thinklab.d67 "Mining knowledge from MEDLINE articles and their indexed MeSH terms") for more information.
This repository quantifies term cooccurrence in MEDLINE.
It's designed for computing the cooccurence of all pairs between two MeSH termsets.
The repository computes MEDLINE cooccurences for the Rephetio hetnet.
See the corresponding [Thinklab discussion](https://doi.org/10.15363/thinklab.d67 "Mining knowledge from MEDLINE articles and their indexed MeSH terms") for more information.

## Modules

Expand All @@ -13,6 +16,12 @@ This repository quantifies term cooccurrence in MEDLINE. It's designed for compu
+ [`symptoms.ipynb`](symptoms.ipynb) computes symptom-disease cooccurrence
+ [`tissues.ipynb`](tissues.ipynb) computes anatomy-disease cooccurrence. This notebook depends on `data/disease-pmids.tsv.gz`, a dataset created by `symptoms.ipynb`.

## History

On 2021-04-09, ownership of this repository on GitHub was changed from `dhimmel/medline` to `hetio/medline`.
The `hetio` organization has GitHub LFS quota,
providing a more convenient way to store large compressed files.

## License

This repository is released under [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "CC0 1.0 Universal: Public Domain Dedication").

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