Update to work with recent version of Pandas

hetio · Feb 5, 2021 · 7af84a6 · 7af84a6
1 parent 5ea60c2
commit 7af84a6
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/diseases.ipynb b/diseases.ipynb
@@ -553,7 +553,7 @@
  "doid_name_df = disease_df[['doid_code', 'doid_name']].drop_duplicates()\n",
  "cooc_df = doid_name_df.rename(columns={'doid_code': 'doid_code_1', 'doid_name': 'doid_name_1'}).merge(cooc_df)\n",
  "cooc_df = doid_name_df.rename(columns={'doid_code': 'doid_code_0', 'doid_name': 'doid_name_0'}).merge(cooc_df)\n",
- "cooc_df = cooc_df.sort(['doid_name_0', 'p_fisher'])"
+ "cooc_df = cooc_df.sort_values(by=['doid_name_0', 'p_fisher'])"
  ]
  },
  {

diff --git a/symptoms.ipynb b/symptoms.ipynb
@@ -1169,7 +1169,7 @@
  "source": [
  "cooc_df = symptom_df[['mesh_id', 'mesh_name']].drop_duplicates().merge(cooc_df)\n",
  "cooc_df = disease_df[['doid_code', 'doid_name']].drop_duplicates().merge(cooc_df)\n",
- "cooc_df = cooc_df.sort(['doid_name', 'p_fisher'])\n",
+ "cooc_df = cooc_df.sort_values(by=['doid_name', 'p_fisher'])\n",
  "cooc_df.to_csv('data/disease-symptom-cooccurrence.tsv', index=False, sep='\\t')\n",
  "cooc_df.head()"
  ]

diff --git a/tissues.ipynb b/tissues.ipynb
@@ -823,7 +823,7 @@
  "source": [
  "cooc_df = uberon_df[['uberon_id', 'uberon_name']].drop_duplicates().merge(cooc_df)\n",
  "cooc_df = disease_df[['doid_code', 'doid_name']].drop_duplicates().merge(cooc_df)\n",
- "cooc_df = cooc_df.sort(['doid_name', 'p_fisher'])\n",
+ "cooc_df = cooc_df.sort_values(by=['doid_name', 'p_fisher'])\n",
  "cooc_df.head()"
  ]
  },