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7 0 0 mb #5678

Merged
merged 25 commits into from
Feb 8, 2024
Merged

7 0 0 mb #5678

merged 25 commits into from
Feb 8, 2024

Commits on Jan 22, 2024

  1. pom bump to 7.0.0 (#5615)

    * pom bump to 7.0.0
    
    * add version enum
    
    * fixed feb release name
    
    ---------
    
    Co-authored-by: Long Ma <[email protected]>
    longma1 and Long Ma committed Jan 22, 2024
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Commits on Jan 24, 2024

  1. Check index existence on raw SQL creation (#5624)

    * Add conditional check on index existence before we try again
    
    * Add conditional check on index existence before we try again
    
    * Changelog
    
    * remit
    
    * remit
    
    * debug statements
    tadgh committed Jan 24, 2024
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  2. 5621 deadlock on caffeine cache when creating a resource with conditi…

    …onal create (#5622)
    
    * Modifying the CacheProvider to avoid doing db I/O within the cache miss value supplier callback.
    
    * Setting the initial capacity of instantiated caches to the cache max size to avoid resizing during operations.
    
    * adding changelog and spotless.
    
    * Fixing typo.
    
    * Addressing comments from code review.
    
    ---------
    
    Co-authored-by: peartree <[email protected]>
    epeartree and peartree committed Jan 24, 2024
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  3. Searching with more than one chained Bundle SearchParameter returns i…

    …ncorrect results (#5614)
    
    * Failing test
    
    * fix
    
    * changelog
    nathandoef committed Jan 24, 2024
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Commits on Jan 25, 2024

  1. Avoiding Exception being thrown on @eventlistener invocation (#5628)

    * replaced EventListener annotation with @PreDestroy
    
    * adding changelog
    
    ---------
    
    Co-authored-by: peartree <[email protected]>
    epeartree and peartree committed Jan 25, 2024
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  2. simple fix (#5630)

    Co-authored-by: Long Ma <[email protected]>
    longma1 and Long Ma committed Jan 25, 2024
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Commits on Jan 26, 2024

  1. Incorrect version of auto versioned reference for conditional update …

    …with urn id placeholder (#5625)
    
    * Incorrect version from versioned_references.auto_at_paths for conditional update - implementation
    volodymyr-korzh committed Jan 26, 2024
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  2. Oracle: Ensure migrated database still takes large resource text upda…

    …tes (#5629)
    
    * First pass at fix to Oracle HFJ_RES_VER.RES_TEXT_VC migration.
    
    * First stab at agreed upon solution.
    
    * Fix error with 4001 by removing unnecessary annotation.
    
    * Spotless and TODO.
    
    * Remove annotation for good and set length to LONG32.
    
    * Fix copyright year.
    
    * Finalize changelog.
    
    * Remove migration changes.  Fix unit test.
    
    * Fix compile error.
    
    * Log output.
    
    * Refactor resource history code into new ResourceHistoryCalculator.
    
    * Spotless.
    
    * Convert record to POJO.
    
    * Restore pre-17 switch statement.
    
    * Finalize new resource history calculator code and tests.
    
    * Spotless.
    
    * Remove logging.
    
    * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5633-oracle-hfj-res-ver-clob-migration.yaml
    
    Apply code reviewer suggestion
    
    Co-authored-by: Michael Buckley <[email protected]>
    
    * Code review feedback.
    
    ---------
    
    Co-authored-by: Michael Buckley <[email protected]>
    lukedegruchy and michaelabuckley committed Jan 26, 2024
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Commits on Jan 29, 2024

  1. Fix expansion for ValueSet with no concepts based on CodeSystem `ur…

    …n:ietf:bcp:13` (#5638)
    
    * When fetching the mimetype code system, return empty CodeSystem with NOTSUPPORTED content. Update expansion logic to handle this case. Add some test cases.
    
    * Minor change to fix test
    
    * Rename changelog file
    
    * Remove TODOs as they're replaced by reported issue
    
    * Revert accidental change added with TODO removal
    Martha Mitran committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. $expunge operation ignoring ExpungeThreadCount setting in certain cas…

    …es (#5637)
    
    * $expunge operation ignoring ExpungeThreadCount setting in certain cases - implementation
    volodymyr-korzh committed Jan 30, 2024
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  2. Fix Measure group id null pointer exception (#5620)

    * Update to new version of clinical reasoning, includes a fix for null pointers on Measure group id
    
    * add changelog
    
    ---------
    
    Co-authored-by: Justin McKelvy <[email protected]>
    JPercival and Capt-Mac committed Jan 30, 2024
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  3. Rule evaluation: Allow Bundles with PATCH Parameters (#5641)

    * Remove parameters clause.
    
    * Finalize changelog.  Add tests.  Finalize implementation.
    
    * Undo changes to this test.
    
    * Revert all changes to FhirQueryRuleImplTest.  Add new RuleImplOpTest.  Ensure that proper nested Bundle is created for test and other fixes.
    
    * Tweak test.
    
    * Use real rule applier in test and remove all mocks.
    lukedegruchy committed Jan 30, 2024
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  4. Prevent batch2 job execution to stop for empty chunk when last job st… (

    #5635)
    
    * Prevent batch2 job execution to stop for empty chunk when last job step is a reduction.
    Add output to bulk export result even when empty.
    
    * Fix test
    
    * Unimportant change to force fresh build
    
    * Implement review suggestions
    
    ---------
    
    Co-authored-by: juan.marchionatto <[email protected]>
    jmarchionatto and juan.marchionatto committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. Index review fixes (#5649)

    * Don't hold locks while adding indices during upgrade.
    * concurrent indexing is non-transactional in PG.
    michaelabuckley committed Jan 31, 2024
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  2. Fix conditional creates without leading '?' (#5646)

    * First commit with failing test.
    
    * More tests and logs.
    
    * More logs
    
    * Try new solution for BaseTransactionProcessor.performIdSubstitutionsInMatchUrl().
    
    * Simplify solution.  Add more tests.
    
    * Changelog.
    
    * javadoc
    lukedegruchy committed Jan 31, 2024
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Commits on Feb 2, 2024

  1. Searching for Bundles with read all Bundles permission returns 403 (#…

    …5644)
    
    * failing test
    
    * another failing test case
    
    * fix
    
    * changelog
    
    * fix bug
    
    * spotless
    
    * cr
    nathandoef committed Feb 2, 2024
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  2. Fix NullPointerException when performing a system bulk export in the …

    …presence of PatientIdPartitionInterceptor. (#5660)
    Martha Mitran committed Feb 2, 2024
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Commits on Feb 3, 2024

  1. Serializing changes for sensitive data (#5655)

    * Add new senstiive data serializer
    
    * Add new senstiive data serializer
    
    * Add new senstiive data serializer
    
    * Remove dead comments
    
    * Change up the test
    
    * review comments
    
    * wip
    
    * Tighten tests and push annotation down
    
    * Tighten tests and push annotation down
    
    * Changelog
    
    * Add test
    
    * 7.0.1-SNAPSHOT bump
    
    * Error code
    
    * Add method used by CDR
    
    * add version enum
    
    * Fix test
    tadgh committed Feb 3, 2024
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Commits on Feb 4, 2024

  1. Rel 7 0 CVE (#5663)

    * Bump json-path
    
    * Pin parrson
    
    * Bump elastic
    
    * Bump spring version
    
    * Exclude JDBC
    tadgh committed Feb 4, 2024
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Commits on Feb 5, 2024

  1. Descendent fix (#5669)

    * Fix "is-a" ValueSet expansion, add "descendent-of" support
    
    * Fixed tests in DSTU3 and R5
    
    * Trigger new build
    
    * Revert "Trigger new build"
    
    This reverts commit 46c672b.
    
    * fix default partition setting on resource (#5617)
    
    * fix default partition setting on resource
    
    * changelog
    
    * Handle DEFAULT partition in rule checker.
    
    * Fix spotless
    
    ---------
    
    Co-authored-by: Michael Buckley <[email protected]>
    Co-authored-by: James Agnew <[email protected]>
    
    * pom bump, doc add, version enum add (#5616)
    
    Co-authored-by: Long Ma <[email protected]>
    
    * fix default partition setting on resource (#5618)
    
    * fix default partition setting on resource
    * Handle DEFAULT partition in rule checker.
    
    Co-authored-by: Ken Stevens <[email protected]>
    
    * Add setting to make broker not use JacksonMessageConverter (#5611)
    
    * Add setting to make broker not use JacksonMessageConverter
    
    * Add changelog
    
    * Implement suggestions
    
    ---------
    
    Co-authored-by: juan.marchionatto <[email protected]>
    
    * Fix version
    
    * add changelog, add attribution, remove accidental bring-overs
    
    * add changelog, add attribution, remove accidental bring-overs
    
    * Finish jira section
    
    ---------
    
    Co-authored-by: Ole Hedegaard <[email protected]>
    Co-authored-by: Ken Stevens <[email protected]>
    Co-authored-by: Michael Buckley <[email protected]>
    Co-authored-by: James Agnew <[email protected]>
    Co-authored-by: longma1 <[email protected]>
    Co-authored-by: Long Ma <[email protected]>
    Co-authored-by: jmarchionatto <[email protected]>
    Co-authored-by: juan.marchionatto <[email protected]>
    9 people committed Feb 5, 2024
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Commits on Feb 6, 2024

  1. mergeback rel_7_0 to master

    Long Ma committed Feb 6, 2024
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  2. fix conflict mistake

    Long Ma committed Feb 6, 2024
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Commits on Feb 7, 2024

  1. removed test assert that is no longer true:

    Long Ma committed Feb 7, 2024
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  2. version bumpb to 7.1.1

    Long Ma committed Feb 7, 2024
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  3. fix version Enum test

    Long Ma committed Feb 7, 2024
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