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7 0 0 mb #5678

Merged
merged 25 commits into from
Feb 8, 2024
Merged

7 0 0 mb #5678

merged 25 commits into from
Feb 8, 2024

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longma1
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@longma1 longma1 commented Feb 6, 2024

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longma1 and others added 21 commits January 22, 2024 22:30
* pom bump to 7.0.0

* add version enum

* fixed feb release name

---------

Co-authored-by: Long Ma <[email protected]>
* Add conditional check on index existence before we try again

* Add conditional check on index existence before we try again

* Changelog

* remit

* remit

* debug statements
…onal create (#5622)

* Modifying the CacheProvider to avoid doing db I/O within the cache miss value supplier callback.

* Setting the initial capacity of instantiated caches to the cache max size to avoid resizing during operations.

* adding changelog and spotless.

* Fixing typo.

* Addressing comments from code review.

---------

Co-authored-by: peartree <[email protected]>
…ncorrect results (#5614)

* Failing test

* fix

* changelog
* replaced EventListener annotation with @PreDestroy

* adding changelog

---------

Co-authored-by: peartree <[email protected]>
Co-authored-by: Long Ma <[email protected]>
…with urn id placeholder (#5625)

* Incorrect version from versioned_references.auto_at_paths for conditional update - implementation
…tes (#5629)

* First pass at fix to Oracle HFJ_RES_VER.RES_TEXT_VC migration.

* First stab at agreed upon solution.

* Fix error with 4001 by removing unnecessary annotation.

* Spotless and TODO.

* Remove annotation for good and set length to LONG32.

* Fix copyright year.

* Finalize changelog.

* Remove migration changes.  Fix unit test.

* Fix compile error.

* Log output.

* Refactor resource history code into new ResourceHistoryCalculator.

* Spotless.

* Convert record to POJO.

* Restore pre-17 switch statement.

* Finalize new resource history calculator code and tests.

* Spotless.

* Remove logging.

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5633-oracle-hfj-res-ver-clob-migration.yaml

Apply code reviewer suggestion

Co-authored-by: Michael Buckley <[email protected]>

* Code review feedback.

---------

Co-authored-by: Michael Buckley <[email protected]>
…n:ietf:bcp:13` (#5638)

* When fetching the mimetype code system, return empty CodeSystem with NOTSUPPORTED content. Update expansion logic to handle this case. Add some test cases.

* Minor change to fix test

* Rename changelog file

* Remove TODOs as they're replaced by reported issue

* Revert accidental change added with TODO removal
…es (#5637)

* $expunge operation ignoring ExpungeThreadCount setting in certain cases - implementation
* Update to new version of clinical reasoning, includes a fix for null pointers on Measure group id

* add changelog

---------

Co-authored-by: Justin McKelvy <[email protected]>
* Remove parameters clause.

* Finalize changelog.  Add tests.  Finalize implementation.

* Undo changes to this test.

* Revert all changes to FhirQueryRuleImplTest.  Add new RuleImplOpTest.  Ensure that proper nested Bundle is created for test and other fixes.

* Tweak test.

* Use real rule applier in test and remove all mocks.
#5635)

* Prevent batch2 job execution to stop for empty chunk when last job step is a reduction.
Add output to bulk export result even when empty.

* Fix test

* Unimportant change to force fresh build

* Implement review suggestions

---------

Co-authored-by: juan.marchionatto <[email protected]>
* Don't hold locks while adding indices during upgrade.
* concurrent indexing is non-transactional in PG.
* First commit with failing test.

* More tests and logs.

* More logs

* Try new solution for BaseTransactionProcessor.performIdSubstitutionsInMatchUrl().

* Simplify solution.  Add more tests.

* Changelog.

* javadoc
…5644)

* failing test

* another failing test case

* fix

* changelog

* fix bug

* spotless

* cr
…presence of PatientIdPartitionInterceptor. (#5660)
* Add new senstiive data serializer

* Add new senstiive data serializer

* Add new senstiive data serializer

* Remove dead comments

* Change up the test

* review comments

* wip

* Tighten tests and push annotation down

* Tighten tests and push annotation down

* Changelog

* Add test

* 7.0.1-SNAPSHOT bump

* Error code

* Add method used by CDR

* add version enum

* Fix test
* Bump json-path

* Pin parrson

* Bump elastic

* Bump spring version

* Exclude JDBC
* Fix "is-a" ValueSet expansion, add "descendent-of" support

* Fixed tests in DSTU3 and R5

* Trigger new build

* Revert "Trigger new build"

This reverts commit 46c672b.

* fix default partition setting on resource (#5617)

* fix default partition setting on resource

* changelog

* Handle DEFAULT partition in rule checker.

* Fix spotless

---------

Co-authored-by: Michael Buckley <[email protected]>
Co-authored-by: James Agnew <[email protected]>

* pom bump, doc add, version enum add (#5616)

Co-authored-by: Long Ma <[email protected]>

* fix default partition setting on resource (#5618)

* fix default partition setting on resource
* Handle DEFAULT partition in rule checker.

Co-authored-by: Ken Stevens <[email protected]>

* Add setting to make broker not use JacksonMessageConverter (#5611)

* Add setting to make broker not use JacksonMessageConverter

* Add changelog

* Implement suggestions

---------

Co-authored-by: juan.marchionatto <[email protected]>

* Fix version

* add changelog, add attribution, remove accidental bring-overs

* add changelog, add attribution, remove accidental bring-overs

* Finish jira section

---------

Co-authored-by: Ole Hedegaard <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: Michael Buckley <[email protected]>
Co-authored-by: James Agnew <[email protected]>
Co-authored-by: longma1 <[email protected]>
Co-authored-by: Long Ma <[email protected]>
Co-authored-by: jmarchionatto <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
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github-actions bot commented Feb 6, 2024

Formatting check succeeded!

@tadgh tadgh enabled auto-merge (squash) February 6, 2024 19:23
@tadgh tadgh disabled auto-merge February 6, 2024 19:23
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codecov bot commented Feb 7, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (2f5ffe7) 81.32% compared to head (70a66a7) 83.33%.
Report is 438 commits behind head on master.

Additional details and impacted files
@@             Coverage Diff              @@
##             master    #5678      +/-   ##
============================================
+ Coverage     81.32%   83.33%   +2.00%     
- Complexity    23650    26794    +3144     
============================================
  Files          1425     1649     +224     
  Lines         86399   103517   +17118     
  Branches      11677    13164    +1487     
============================================
+ Hits          70265    86267   +16002     
- Misses        10947    11612     +665     
- Partials       5187     5638     +451     

☔ View full report in Codecov by Sentry.
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@longma1 longma1 merged commit 993cfcc into master Feb 8, 2024
66 checks passed
@longma1 longma1 deleted the 7_0_0_mb branch February 8, 2024 05:16
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9 participants