Add batch2 interfaces to obtain recent instances #3601
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jaison-b
approved these changes
May 10, 2022
Codecov Report
@@ Coverage Diff @@
## rel_6_0 #3601 +/- ##
==========================================
Coverage ? 83.11%
Complexity ? 21541
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Files ? 1431
Lines ? 77551
Branches ? 11441
==========================================
Hits ? 64453
Misses ? 8705
Partials ? 4393 Continue to review full report at Codecov.
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tadgh
added a commit
that referenced
this pull request
May 16, 2022
* adding version.yaml, updating version in pom.xml * It is possible to write to a resource in a partition the user is not authorized to. (#3397) * fixed * remove sout * add msg.code * fix failed tests * fix equal sign * update msg code * extract method * Fix up code numbers * Clean changelog Co-authored-by: Tadgh <[email protected]> * Revert final artifact version * add graphql test (#3585) * added graphql birthdate test * fix variable name * typo * 3506 mdm log enhancement (#3543) * Providing Fixme's to be reworked at a later time. * Adding // FIXME Anna to assist our Austrian friend. * Adding logging test as a first step in addressing issue #2822. * #3506 part 2: enhance logging for (un)successful MDM matching #3506 part 2: enhance logging for (un)successful MDM matching * Update MdmMatchLinkSvc.java #3506 move "narrowed down" log to different place * #3506 added scores and tests #3506 added scores and tests * #3506 formatting #3506 formatting * #3506 create changelog file #3506 create changelog file * #3506 fix typo #3506 fix typo * #3506 fix part 3, minor formatting #3506 fix part 3, minor formatting * #3506 fix tests #3506 fix tests Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> * mdm matching (#3579) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> * begin with failing test * fixed * changelog * add jira tag * Update to 6 1 (#3582) * added changelog folder, upped version * version enum * add a few more unit tests to assert proper NO_MATCH exclusion * revert merge master doh! bad reflexes * revert merge origin master * unrevert revert. ugh what a pain * merge recovery. fix poms. * merge recovery. more reverting * merge recovery. more reverting * merge recovery. more reverting * Revert "merge recovery. fix poms." This reverts commit ae6e0dd. * more revert revert reversions * more revert revert reversions * pre-review cleanup Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Mark Iantorno <[email protected]> * Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586) * When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller. * License * Ks 20220508 log colour (#3592) * don't use colours when output is redirected to a file * change log * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> * 3584 case sensitive string elasticsearch (#3596) * Fix for case-sensitive search with newer elasticsearch * Test and fix ascii normalization too * more test cases * comments * Docs update empi usecase (#3598) * Update diagram for use case 5 * Add new page for database support * Licnese * Mb norm fix (#3604) * Normalize query since wildcard searches aren't normalized in elastic * Handle batch2 job cancellation (#3603) * Handle batch2 job cancellation * Add CANCELLED status * Remove unuseful test Co-authored-by: juan.marchionatto <[email protected]> * Add batch2 interfaces to obtain recent instances (#3601) Co-authored-by: juan.marchionatto <[email protected]> * changelog folder * Documentation change, added warning log and change log for ticket (#3609) Co-authored-by: Steven Li <[email protected]> * fix ne for lastUpdated search param (#3589) * init/wip * add implementation, add tests * add checks and some refactoring * refactor and simplify tests * refactor * get rid of some of the warnings * add changelog * remove my todos * redo ne logic to account for less precise dates * add tests * refactoring * rename to follow convention Co-authored-by: Justin_Dar <[email protected]> * Version bump Co-authored-by: markiantorno <[email protected]> Co-authored-by: katiesmilecdr <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: alackerbauer <[email protected]> Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: michaelabuckley <[email protected]> Co-authored-by: jmarchionatto <[email protected]> Co-authored-by: juan.marchionatto <[email protected]> Co-authored-by: StevenXLi <[email protected]> Co-authored-by: Steven Li <[email protected]> Co-authored-by: jdar8 <[email protected]> Co-authored-by: Justin_Dar <[email protected]>
JasonRoberts-smile
pushed a commit
that referenced
this pull request
May 19, 2022
* adding version.yaml, updating version in pom.xml * It is possible to write to a resource in a partition the user is not authorized to. (#3397) * fixed * remove sout * add msg.code * fix failed tests * fix equal sign * update msg code * extract method * Fix up code numbers * Clean changelog Co-authored-by: Tadgh <[email protected]> * Revert final artifact version * add graphql test (#3585) * added graphql birthdate test * fix variable name * typo * 3506 mdm log enhancement (#3543) * Providing Fixme's to be reworked at a later time. * Adding // FIXME Anna to assist our Austrian friend. * Adding logging test as a first step in addressing issue #2822. * #3506 part 2: enhance logging for (un)successful MDM matching #3506 part 2: enhance logging for (un)successful MDM matching * Update MdmMatchLinkSvc.java #3506 move "narrowed down" log to different place * #3506 added scores and tests #3506 added scores and tests * #3506 formatting #3506 formatting * #3506 create changelog file #3506 create changelog file * #3506 fix typo #3506 fix typo * #3506 fix part 3, minor formatting #3506 fix part 3, minor formatting * #3506 fix tests #3506 fix tests Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> * mdm matching (#3579) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> * begin with failing test * fixed * changelog * add jira tag * Update to 6 1 (#3582) * added changelog folder, upped version * version enum * add a few more unit tests to assert proper NO_MATCH exclusion * revert merge master doh! bad reflexes * revert merge origin master * unrevert revert. ugh what a pain * merge recovery. fix poms. * merge recovery. more reverting * merge recovery. more reverting * merge recovery. more reverting * Revert "merge recovery. fix poms." This reverts commit ae6e0dd. * more revert revert reversions * more revert revert reversions * pre-review cleanup Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Mark Iantorno <[email protected]> * Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586) * When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller. * License * Ks 20220508 log colour (#3592) * don't use colours when output is redirected to a file * change log * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> * 3584 case sensitive string elasticsearch (#3596) * Fix for case-sensitive search with newer elasticsearch * Test and fix ascii normalization too * more test cases * comments * Docs update empi usecase (#3598) * Update diagram for use case 5 * Add new page for database support * Licnese * Mb norm fix (#3604) * Normalize query since wildcard searches aren't normalized in elastic * Handle batch2 job cancellation (#3603) * Handle batch2 job cancellation * Add CANCELLED status * Remove unuseful test Co-authored-by: juan.marchionatto <[email protected]> * Add batch2 interfaces to obtain recent instances (#3601) Co-authored-by: juan.marchionatto <[email protected]> * changelog folder * Documentation change, added warning log and change log for ticket (#3609) Co-authored-by: Steven Li <[email protected]> * fix ne for lastUpdated search param (#3589) * init/wip * add implementation, add tests * add checks and some refactoring * refactor and simplify tests * refactor * get rid of some of the warnings * add changelog * remove my todos * redo ne logic to account for less precise dates * add tests * refactoring * rename to follow convention Co-authored-by: Justin_Dar <[email protected]> * Version bump * Add skip of checkstyle to upload * Typo Co-authored-by: markiantorno <[email protected]> Co-authored-by: katiesmilecdr <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: alackerbauer <[email protected]> Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: michaelabuckley <[email protected]> Co-authored-by: jmarchionatto <[email protected]> Co-authored-by: juan.marchionatto <[email protected]> Co-authored-by: StevenXLi <[email protected]> Co-authored-by: Steven Li <[email protected]> Co-authored-by: jdar8 <[email protected]> Co-authored-by: Justin_Dar <[email protected]>
tadgh
added a commit
that referenced
this pull request
Jun 29, 2022
* adding version.yaml, updating version in pom.xml * It is possible to write to a resource in a partition the user is not authorized to. (#3397) * fixed * remove sout * add msg.code * fix failed tests * fix equal sign * update msg code * extract method * Fix up code numbers * Clean changelog Co-authored-by: Tadgh <[email protected]> * Revert final artifact version * add graphql test (#3585) * added graphql birthdate test * fix variable name * typo * 3506 mdm log enhancement (#3543) * Providing Fixme's to be reworked at a later time. * Adding // FIXME Anna to assist our Austrian friend. * Adding logging test as a first step in addressing issue #2822. * #3506 part 2: enhance logging for (un)successful MDM matching #3506 part 2: enhance logging for (un)successful MDM matching * Update MdmMatchLinkSvc.java #3506 move "narrowed down" log to different place * #3506 added scores and tests #3506 added scores and tests * #3506 formatting #3506 formatting * #3506 create changelog file #3506 create changelog file * #3506 fix typo #3506 fix typo * #3506 fix part 3, minor formatting #3506 fix part 3, minor formatting * #3506 fix tests #3506 fix tests Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> * mdm matching (#3579) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> * begin with failing test * fixed * changelog * add jira tag * Update to 6 1 (#3582) * added changelog folder, upped version * version enum * add a few more unit tests to assert proper NO_MATCH exclusion * revert merge master doh! bad reflexes * revert merge origin master * unrevert revert. ugh what a pain * merge recovery. fix poms. * merge recovery. more reverting * merge recovery. more reverting * merge recovery. more reverting * Revert "merge recovery. fix poms." This reverts commit ae6e0dd. * more revert revert reversions * more revert revert reversions * pre-review cleanup Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Mark Iantorno <[email protected]> * Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586) * When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller. * License * Ks 20220508 log colour (#3592) * don't use colours when output is redirected to a file * change log * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> * 3584 case sensitive string elasticsearch (#3596) * Fix for case-sensitive search with newer elasticsearch * Test and fix ascii normalization too * more test cases * comments * Docs update empi usecase (#3598) * Update diagram for use case 5 * Add new page for database support * Licnese * Mb norm fix (#3604) * Normalize query since wildcard searches aren't normalized in elastic * Handle batch2 job cancellation (#3603) * Handle batch2 job cancellation * Add CANCELLED status * Remove unuseful test Co-authored-by: juan.marchionatto <[email protected]> * Add batch2 interfaces to obtain recent instances (#3601) Co-authored-by: juan.marchionatto <[email protected]> * changelog folder * Documentation change, added warning log and change log for ticket (#3609) Co-authored-by: Steven Li <[email protected]> * fix ne for lastUpdated search param (#3589) * init/wip * add implementation, add tests * add checks and some refactoring * refactor and simplify tests * refactor * get rid of some of the warnings * add changelog * remove my todos * redo ne logic to account for less precise dates * add tests * refactoring * rename to follow convention Co-authored-by: Justin_Dar <[email protected]> * Version bump * Add skip of checkstyle to upload * Typo * upping version enum, upping version number, 6.0.1 * Group Bulk Export rules exiting too early. (#3643) * Implementation, test, changelog * Add jira link * adding backport in yaml for 3642 * adding folder for 6.0.1 release * pom changes to publish checkstyle to sonatype * bad version in pom file * Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider * AUtomcplete error code * updating comment indicating final erorr code * Bump error code * fixing version enum so release docs generate correctly, adding additional changelog for 3650 * 3684 subscription for delivering delete events formatted wrong (#3685) * Fixed issue with delivering delete events Subscriptions * Extracted deliverer class name to a constant, now shared across tests and interceptor class * Added change log and doc changes * moved the constant to a more appropriate place Co-authored-by: Steven Li <[email protected]> * Version bump * Add version enum * Version enum and folder * duplicate import * duplicate import Co-authored-by: markiantorno <[email protected]> Co-authored-by: katiesmilecdr <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: alackerbauer <[email protected]> Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: michaelabuckley <[email protected]> Co-authored-by: jmarchionatto <[email protected]> Co-authored-by: juan.marchionatto <[email protected]> Co-authored-by: StevenXLi <[email protected]> Co-authored-by: Steven Li <[email protected]> Co-authored-by: jdar8 <[email protected]> Co-authored-by: Justin_Dar <[email protected]>
tadgh
added a commit
that referenced
this pull request
Aug 30, 2022
* adding version.yaml, updating version in pom.xml * It is possible to write to a resource in a partition the user is not authorized to. (#3397) * fixed * remove sout * add msg.code * fix failed tests * fix equal sign * update msg code * extract method * Fix up code numbers * Clean changelog Co-authored-by: Tadgh <[email protected]> * Revert final artifact version * add graphql test (#3585) * added graphql birthdate test * fix variable name * typo * 3506 mdm log enhancement (#3543) * Providing Fixme's to be reworked at a later time. * Adding // FIXME Anna to assist our Austrian friend. * Adding logging test as a first step in addressing issue #2822. * #3506 part 2: enhance logging for (un)successful MDM matching #3506 part 2: enhance logging for (un)successful MDM matching * Update MdmMatchLinkSvc.java #3506 move "narrowed down" log to different place * #3506 added scores and tests #3506 added scores and tests * #3506 formatting #3506 formatting * #3506 create changelog file #3506 create changelog file * #3506 fix typo #3506 fix typo * #3506 fix part 3, minor formatting #3506 fix part 3, minor formatting * #3506 fix tests #3506 fix tests Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> * mdm matching (#3579) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> * begin with failing test * fixed * changelog * add jira tag * Update to 6 1 (#3582) * added changelog folder, upped version * version enum * add a few more unit tests to assert proper NO_MATCH exclusion * revert merge master doh! bad reflexes * revert merge origin master * unrevert revert. ugh what a pain * merge recovery. fix poms. * merge recovery. more reverting * merge recovery. more reverting * merge recovery. more reverting * Revert "merge recovery. fix poms." This reverts commit ae6e0dd. * more revert revert reversions * more revert revert reversions * pre-review cleanup Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Mark Iantorno <[email protected]> * Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586) * When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller. * License * Ks 20220508 log colour (#3592) * don't use colours when output is redirected to a file * change log * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594) * Added fix for hapifhir/hapi-fhir-jpaserver-starter#328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> * 3584 case sensitive string elasticsearch (#3596) * Fix for case-sensitive search with newer elasticsearch * Test and fix ascii normalization too * more test cases * comments * Docs update empi usecase (#3598) * Update diagram for use case 5 * Add new page for database support * Licnese * Mb norm fix (#3604) * Normalize query since wildcard searches aren't normalized in elastic * Handle batch2 job cancellation (#3603) * Handle batch2 job cancellation * Add CANCELLED status * Remove unuseful test Co-authored-by: juan.marchionatto <[email protected]> * Add batch2 interfaces to obtain recent instances (#3601) Co-authored-by: juan.marchionatto <[email protected]> * changelog folder * Documentation change, added warning log and change log for ticket (#3609) Co-authored-by: Steven Li <[email protected]> * fix ne for lastUpdated search param (#3589) * init/wip * add implementation, add tests * add checks and some refactoring * refactor and simplify tests * refactor * get rid of some of the warnings * add changelog * remove my todos * redo ne logic to account for less precise dates * add tests * refactoring * rename to follow convention Co-authored-by: Justin_Dar <[email protected]> * Version bump * Add skip of checkstyle to upload * Typo * upping version enum, upping version number, 6.0.1 * Group Bulk Export rules exiting too early. (#3643) * Implementation, test, changelog * Add jira link * adding backport in yaml for 3642 * adding folder for 6.0.1 release * pom changes to publish checkstyle to sonatype * bad version in pom file * Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider * AUtomcplete error code * updating comment indicating final erorr code * Bump error code * fixing version enum so release docs generate correctly, adding additional changelog for 3650 * 3684 subscription for delivering delete events formatted wrong (#3685) * Fixed issue with delivering delete events Subscriptions * Extracted deliverer class name to a constant, now shared across tests and interceptor class * Added change log and doc changes * moved the constant to a more appropriate place Co-authored-by: Steven Li <[email protected]> * Version bump * Add version enum * Version enum and folder * adding release pipeline yml file fo azure * Adding autoclose for sonatype publishing (#3797) * Add impl test and changelog (#3713) * fix up changelog, new version * Version bump * Updating version to: 6.0.4 post release. * reverting 6.0.4 commit * Updating version to: 6.0.4 post release. * removing double entry from preious release * Add support for DSTU3 delete subscrion events, add test * Add changelogP * Add version enum * Remove notnull * Add test for DSTU2 * Updating version to: 6.0.5 post release. * Fix up * wip * Adding solution and changeLog file. * Adding failing test. * fix up * Version bump Co-authored-by: markiantorno <[email protected]> Co-authored-by: katiesmilecdr <[email protected]> Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: alackerbauer <[email protected]> Co-authored-by: Etienne Poirier <[email protected]> Co-authored-by: Anna <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: Jens Kristian Villadsen <[email protected]> Co-authored-by: michaelabuckley <[email protected]> Co-authored-by: jmarchionatto <[email protected]> Co-authored-by: juan.marchionatto <[email protected]> Co-authored-by: StevenXLi <[email protected]> Co-authored-by: Steven Li <[email protected]> Co-authored-by: jdar8 <[email protected]> Co-authored-by: Justin_Dar <[email protected]>
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