Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update to 6 1 #3582

Merged
merged 2 commits into from
May 3, 2022
Merged

Update to 6 1 #3582

merged 2 commits into from
May 3, 2022

Conversation

markiantorno
Copy link
Collaborator

This just updates the version after release.

@markiantorno markiantorno requested a review from tadgh May 3, 2022 19:13
Copy link
Collaborator

@tadgh tadgh left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

@tadgh tadgh enabled auto-merge (squash) May 3, 2022 19:14
@codecov
Copy link

codecov bot commented May 3, 2022

Codecov Report

Merging #3582 (9e82f96) into master (eb4732a) will decrease coverage by 0.01%.
The diff coverage is 100.00%.

@@             Coverage Diff              @@
##             master    #3582      +/-   ##
============================================
- Coverage     83.10%   83.09%   -0.02%     
+ Complexity    21511    21508       -3     
============================================
  Files          1430     1430              
  Lines         77506    77507       +1     
  Branches      11433    11433              
============================================
- Hits          64414    64407       -7     
- Misses         8698     8705       +7     
- Partials       4394     4395       +1     
Impacted Files Coverage Δ
...se/src/main/java/ca/uhn/fhir/util/VersionEnum.java 97.14% <100.00%> (+0.04%) ⬆️
...scription/match/deliver/email/EmailSenderImpl.java 75.00% <0.00%> (-25.00%) ⬇️
...n/fhir/jpa/config/HapiFhirHibernateJpaDialect.java 75.00% <0.00%> (-15.63%) ⬇️
...r/UserRequestRetryVersionConflictsInterceptor.java 83.33% <0.00%> (-4.17%) ⬇️
.../uhn/fhir/jpa/term/TermDeferredStorageSvcImpl.java 90.18% <0.00%> (+0.93%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update eb4732a...9e82f96. Read the comment docs.

@tadgh tadgh merged commit 544ef3d into master May 3, 2022
@tadgh tadgh deleted the update_to_6_1 branch May 3, 2022 20:34
fil512 added a commit that referenced this pull request May 5, 2022
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>
tadgh added a commit that referenced this pull request May 16, 2022
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <[email protected]>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* #3506 part 2: enhance logging for (un)successful MDM matching

#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* Handle batch2 job cancellation (#3603)

* Handle batch2 job cancellation

* Add CANCELLED status

* Remove unuseful test

Co-authored-by: juan.marchionatto <[email protected]>

* Add batch2 interfaces to obtain recent instances (#3601)

Co-authored-by: juan.marchionatto <[email protected]>

* changelog folder

* Documentation change, added warning log and change log for ticket (#3609)

Co-authored-by: Steven Li <[email protected]>

* fix ne for lastUpdated search param (#3589)

* init/wip

* add implementation, add tests

* add checks and some refactoring

* refactor and simplify tests

* refactor

* get rid of some of the warnings

* add changelog

* remove my todos

* redo ne logic to account for less precise dates

* add tests

* refactoring

* rename to follow convention

Co-authored-by: Justin_Dar <[email protected]>

* Version bump

Co-authored-by: markiantorno <[email protected]>
Co-authored-by: katiesmilecdr <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: alackerbauer <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: jmarchionatto <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
Co-authored-by: StevenXLi <[email protected]>
Co-authored-by: Steven Li <[email protected]>
Co-authored-by: jdar8 <[email protected]>
Co-authored-by: Justin_Dar <[email protected]>
JasonRoberts-smile pushed a commit that referenced this pull request May 19, 2022
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <[email protected]>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* #3506 part 2: enhance logging for (un)successful MDM matching

#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* Handle batch2 job cancellation (#3603)

* Handle batch2 job cancellation

* Add CANCELLED status

* Remove unuseful test

Co-authored-by: juan.marchionatto <[email protected]>

* Add batch2 interfaces to obtain recent instances (#3601)

Co-authored-by: juan.marchionatto <[email protected]>

* changelog folder

* Documentation change, added warning log and change log for ticket (#3609)

Co-authored-by: Steven Li <[email protected]>

* fix ne for lastUpdated search param (#3589)

* init/wip

* add implementation, add tests

* add checks and some refactoring

* refactor and simplify tests

* refactor

* get rid of some of the warnings

* add changelog

* remove my todos

* redo ne logic to account for less precise dates

* add tests

* refactoring

* rename to follow convention

Co-authored-by: Justin_Dar <[email protected]>

* Version bump

* Add skip of checkstyle to upload

* Typo

Co-authored-by: markiantorno <[email protected]>
Co-authored-by: katiesmilecdr <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: alackerbauer <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: jmarchionatto <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
Co-authored-by: StevenXLi <[email protected]>
Co-authored-by: Steven Li <[email protected]>
Co-authored-by: jdar8 <[email protected]>
Co-authored-by: Justin_Dar <[email protected]>
tadgh added a commit that referenced this pull request Jun 29, 2022
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <[email protected]>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* #3506 part 2: enhance logging for (un)successful MDM matching

#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* Handle batch2 job cancellation (#3603)

* Handle batch2 job cancellation

* Add CANCELLED status

* Remove unuseful test

Co-authored-by: juan.marchionatto <[email protected]>

* Add batch2 interfaces to obtain recent instances (#3601)

Co-authored-by: juan.marchionatto <[email protected]>

* changelog folder

* Documentation change, added warning log and change log for ticket (#3609)

Co-authored-by: Steven Li <[email protected]>

* fix ne for lastUpdated search param (#3589)

* init/wip

* add implementation, add tests

* add checks and some refactoring

* refactor and simplify tests

* refactor

* get rid of some of the warnings

* add changelog

* remove my todos

* redo ne logic to account for less precise dates

* add tests

* refactoring

* rename to follow convention

Co-authored-by: Justin_Dar <[email protected]>

* Version bump

* Add skip of checkstyle to upload

* Typo

* upping version enum, upping version number, 6.0.1

* Group Bulk Export rules exiting too early.  (#3643)

* Implementation, test, changelog

* Add jira link

* adding backport in yaml for 3642

* adding folder for 6.0.1 release

* pom changes to publish checkstyle to sonatype

* bad version in pom file

* Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider

* AUtomcplete error code

* updating comment indicating final erorr code

* Bump error code

* fixing version enum so release docs generate correctly, adding additional changelog for 3650

* 3684 subscription for delivering delete events formatted wrong (#3685)

* Fixed issue with delivering delete events Subscriptions

* Extracted deliverer class name to a constant, now shared across tests and interceptor class

* Added change log and doc changes

* moved the constant to a more appropriate place

Co-authored-by: Steven Li <[email protected]>

* Version bump

* Add version enum

* Version enum and folder

* duplicate import

* duplicate import

Co-authored-by: markiantorno <[email protected]>
Co-authored-by: katiesmilecdr <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: alackerbauer <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: jmarchionatto <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
Co-authored-by: StevenXLi <[email protected]>
Co-authored-by: Steven Li <[email protected]>
Co-authored-by: jdar8 <[email protected]>
Co-authored-by: Justin_Dar <[email protected]>
jamesagnew added a commit that referenced this pull request Aug 3, 2022
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <[email protected]>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* #3506 part 2: enhance logging for (un)successful MDM matching

#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* added support for OO.issue.details from Java RI Validator

* remove duplicated Msg.code

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* removed duplicated dependency with wrong version

* fixed test file(added a Base64 string)

* fixed tests

* fixed test:
history?_since is an instant

* removing time from date-strings in examples

* fixed more instant strings

* changed filtering of messages to messageId

* fixed messageId filter on missing profiles

* changed messageID system string to Grahames preferred String

* updated MsgIds of unsupported methods

* removed fixed commons-codec version as fhir.core uses commons-codec:1.15
This will introduce issues with the android built.

* fixed GraphQL Test

* fixing test issue caused by different message string, switch to details code assertion

* fixing test issue caused by different message string, switch to details code assertion

* updated Msg.codes

* updated Msg.codes

* fixed duplicated Msg.codes

* setErrorOnInvalidValue set to false in test

* reverted date precision test changes

* updated r5 resources to latest build version

* updated to latest snapshot, hapifhir/org.hl7.fhir.core#884 causes test failures.

* Try to fix message codes

* Test fixes

* Checkstyle fix

* Test fix

* Try to avoid CME

Co-authored-by: markiantorno <[email protected]>
Co-authored-by: katiesmilecdr <[email protected]>
Co-authored-by: Tadgh <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: alackerbauer <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: James Agnew <[email protected]>
tadgh added a commit that referenced this pull request Aug 30, 2022
* adding version.yaml, updating version in pom.xml

* It is possible to write to a resource in a partition the user is not authorized to. (#3397)

* fixed

* remove sout

* add msg.code

* fix failed tests

* fix equal sign

* update msg code

* extract method

* Fix up code numbers

* Clean changelog

Co-authored-by: Tadgh <[email protected]>

* Revert final artifact version

* add graphql test (#3585)

* added graphql birthdate test

* fix variable name

* typo

* 3506 mdm log enhancement (#3543)

* Providing Fixme's to be reworked at a later time.

* Adding // FIXME Anna to assist our Austrian friend.

* Adding logging test as a first step in addressing issue #2822.

* #3506 part 2: enhance logging for (un)successful MDM matching

#3506 part 2: enhance logging for (un)successful MDM matching

* Update MdmMatchLinkSvc.java

#3506 move "narrowed down" log to different place

* #3506 added scores and tests

#3506 added scores and tests

* #3506 formatting

#3506 formatting

* #3506 create changelog file

#3506 create changelog file

* #3506 fix typo

#3506 fix typo

* #3506 fix part 3, minor formatting

#3506 fix part 3, minor formatting

* #3506 fix tests

#3506 fix tests

Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>

* mdm matching (#3579)

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

* begin with failing test

* fixed

* changelog

* add jira tag

* Update to 6 1 (#3582)

* added changelog folder, upped version

* version enum

* add a few more unit tests to assert proper NO_MATCH exclusion

* revert merge master doh! bad reflexes

* revert merge origin master

* unrevert revert.  ugh what a pain

* merge recovery.  fix poms.

* merge recovery.  more reverting

* merge recovery.  more reverting

* merge recovery.  more reverting

* Revert "merge recovery.  fix poms."

This reverts commit ae6e0dd.

* more revert revert reversions

* more revert revert reversions

* pre-review cleanup

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Mark Iantorno <[email protected]>

* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)

* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.

* License

* Ks 20220508 log colour (#3592)

* don't use colours when output is redirected to a file

* change log

* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)

* Added fix for hapifhir/hapi-fhir-jpaserver-starter#328

* Update HapiFhirJpaMigrationTasks.java

Corrected ordering

* Update HapiFhirJpaMigrationTasks.java

Moving index status to be last operation

* Revert "Update HapiFhirJpaMigrationTasks.java"

This reverts commit 37bfd3e.

* Moved to bottom

Co-authored-by: Jens Kristian Villadsen <[email protected]>

Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>

* 3584 case sensitive string elasticsearch (#3596)

* Fix for case-sensitive search with newer elasticsearch

* Test and fix ascii normalization too

* more test cases

* comments

* Docs update empi usecase (#3598)

* Update diagram for use case 5

* Add new page for database support

* Licnese

* Mb norm fix (#3604)

* Normalize query since wildcard searches aren't normalized in elastic

* Handle batch2 job cancellation (#3603)

* Handle batch2 job cancellation

* Add CANCELLED status

* Remove unuseful test

Co-authored-by: juan.marchionatto <[email protected]>

* Add batch2 interfaces to obtain recent instances (#3601)

Co-authored-by: juan.marchionatto <[email protected]>

* changelog folder

* Documentation change, added warning log and change log for ticket (#3609)

Co-authored-by: Steven Li <[email protected]>

* fix ne for lastUpdated search param (#3589)

* init/wip

* add implementation, add tests

* add checks and some refactoring

* refactor and simplify tests

* refactor

* get rid of some of the warnings

* add changelog

* remove my todos

* redo ne logic to account for less precise dates

* add tests

* refactoring

* rename to follow convention

Co-authored-by: Justin_Dar <[email protected]>

* Version bump

* Add skip of checkstyle to upload

* Typo

* upping version enum, upping version number, 6.0.1

* Group Bulk Export rules exiting too early.  (#3643)

* Implementation, test, changelog

* Add jira link

* adding backport in yaml for 3642

* adding folder for 6.0.1 release

* pom changes to publish checkstyle to sonatype

* bad version in pom file

* Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider

* AUtomcplete error code

* updating comment indicating final erorr code

* Bump error code

* fixing version enum so release docs generate correctly, adding additional changelog for 3650

* 3684 subscription for delivering delete events formatted wrong (#3685)

* Fixed issue with delivering delete events Subscriptions

* Extracted deliverer class name to a constant, now shared across tests and interceptor class

* Added change log and doc changes

* moved the constant to a more appropriate place

Co-authored-by: Steven Li <[email protected]>

* Version bump

* Add version enum

* Version enum and folder

* adding release pipeline yml file fo azure

* Adding autoclose for sonatype publishing (#3797)

* Add impl test and changelog (#3713)

* fix up changelog, new version

* Version bump

* Updating version to: 6.0.4 post release.

* reverting 6.0.4 commit

* Updating version to: 6.0.4 post release.

* removing double entry from preious release

* Add support for DSTU3 delete subscrion events, add test

* Add changelogP

* Add version enum

* Remove notnull

* Add test for DSTU2

* Updating version to: 6.0.5 post release.

* Fix up

* wip

* Adding solution and changeLog file.

* Adding failing test.

* fix up

* Version bump

Co-authored-by: markiantorno <[email protected]>
Co-authored-by: katiesmilecdr <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: alackerbauer <[email protected]>
Co-authored-by: Etienne Poirier <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: Jens Kristian Villadsen <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: jmarchionatto <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
Co-authored-by: StevenXLi <[email protected]>
Co-authored-by: Steven Li <[email protected]>
Co-authored-by: jdar8 <[email protected]>
Co-authored-by: Justin_Dar <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants