Installs Ruby, JRuby, TruffleRuby, or mruby

A script to check fungus names for the most up to date nomenclature according to Species Fungorum 🍄

A tool to filter BUSCO output into single-copy gene files for phylogenomics

A shell script to clone a booted disk.

Efficient implementation of the MAD method for inferring the location of the root in a large phylogeny.

Files for EukRef workshop in Barcelona - July 2023

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

A genome completeness evaluation tool based on miniprot

Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).

Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size

Validate and edit small eukaryotic genome assemblies

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

🎄Unofficial control for Twinkly - Smart Decoration LED lights.

Structural and functional annotation of eukaryotic metagenome-assembled genomes

A Pure-Python parser of HMMER3 output

Interim data for the Darwin Tree of Life Project

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)

Eukaryotic Genome Annotation Pipeline

TaxOnTree is a bioinformatic tool that automatically colors a phylogenetic tree according to the taxonomic information provided by NCBI taxonomy.

BeerDeCoded first results using ITS

A simple command-line tool to download data from Joint Genome Institute databases

FastQC port to Qt5: A quality control tool for high throughput sequence data.

electronic Hydrometer