Commits

Commits on Jan 30, 2019

Merge pull request #97 from blankenberg/dan-fixes
gwaybio
committedJan 30, 2019
Declare argument type when int for float.
blankenberg
committedJan 30, 2019
Fix environment.yml so that conda env update doesn't throw CondaValueError: invalid package specification: conda-forge::r-ggrepel 0.8.0
blankenberg
committedJan 30, 2019

Commits on Jan 2, 2019

Merge pull request #96 from gwaygenomics/add-ras-genes
gwaybio
committedJan 2, 2019
add ras genes file
gwaybio
committedJan 2, 2019

Commits on Dec 3, 2018

Fix sample freeze (#94 )
gwaybio
committedDec 3, 2018

Commits on Nov 6, 2018

Move pancancer_classifier.py arguments call to utility script (#93 )
gwaybio
committedNov 6, 2018

Commits on Nov 1, 2018

Updating Compressed Feature Comparison Scripts (#90 )
gwaybio
committedNov 1, 2018
Add Feature Comparison Data (#91 )
gwaybio
committedNov 1, 2018

Commits on Oct 23, 2018

Compression Feature Comparison Data Generation (#89 )
gwaybio
committedOct 23, 2018

Commits on Oct 15, 2018

Update TP53 pipeline analysis (#86 )
gwaybio
committedOct 15, 2018

Commits on Oct 5, 2018

Adding snaptron data for TP53 analysis (#85 )
gwaybio
committedOct 5, 2018

Commits on Oct 4, 2018

Adding Ras Classifier Results (#84 )
gwaybio
committedOct 4, 2018

Commits on Sep 28, 2018

Hotfix Adding Cell Line Analysis (#83 )
gwaybio
committedSep 28, 2018

Commits on Sep 25, 2018

Refactoring Pancancer Ras Analysis (#82 )
gwaybio
committedSep 25, 2018

Commits on Aug 17, 2018

add mutation freeze data (#80 )
gwaybio
committedAug 17, 2018

Commits on Apr 18, 2018

Add PanCanAtlas Data Download (#75 )
gwaybio
committedApr 18, 2018

Commits on Apr 5, 2018

Saving CCLE Ras Classifier Scores (#73 )
gwaybio
committedApr 5, 2018

Commits on Feb 23, 2018

Update CCLE variants in Response to Reviewers (#71 )
gwaybio
committedFeb 23, 2018
Differentially Expressed Genes Update (#72 )
gwaybio
committedFeb 23, 2018

Commits on Jan 23, 2018

Update DEG analysis (#70 )
gwaybio
committedJan 23, 2018

Commits on Jan 16, 2018

update cooccurence (#69 )
gwaybio
committedJan 16, 2018

Commits on Jan 1, 2018

Hotfix reviewer response (#68 )
gwaybio
committedJan 1, 2018

Commits on Dec 29, 2017

Code Updates in Response to Reviewers for Ras paper (#67 )
gwaybio
committedDec 29, 2017

Commits on Dec 22, 2017

Add CCLE Pharmacology Analysis (#66 )
gwaybio
committedDec 22, 2017

Commits on Dec 21, 2017

Merge pull request #65 from gwaygenomics/update-cnv-tp53
gwaybio
committedDec 21, 2017
increase font size in copy burden legend
gwaybio
committedDec 21, 2017

Commits on Nov 23, 2017

Update TP53 Figures (#64 )
gwaybio
committedNov 23, 2017

Commits on Nov 3, 2017

add ddr supplementary figure notebook (#63 )
gwaybio
committedNov 3, 2017

Commits on Nov 1, 2017

calculate effect size of phenocopy experiment (#62 )
gwaybio
committedNov 1, 2017

Commits on Oct 20, 2017

add tp53 phenocopy analysis (#61 )
gwaybio
committedOct 20, 2017

Commits on Oct 6, 2017

Add AUROC to comparison plot (#60 )
gwaybio
committedOct 6, 2017
add all intermediate results from ./nf1_feature_comparison.sh (#59 )
gwaybio
committedOct 6, 2017
Updating Feature Comparison (Part IB) (#58 )
gwaybio
committedOct 6, 2017

Commits on Oct 5, 2017

Add Feature Comparison Analysis (Part I) (#57 )
gwaybio
committedOct 5, 2017