Add CCLE Pharmacology Analysis #66
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dhimmel
approved these changes
Dec 21, 2017
scripts/viz/ras_ccle_pharmacology.R
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| geom_smooth(method = "lm", se = se) + | ||
| geom_segment(aes(x = 0.5, y = -0.1, xend = 0.5, yend = 6), | ||
| linetype = "dashed", color = "grey") + | ||
| scale_color_manual(values = c("#377eb8", "#ff7f00"), |
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I wonder if you should also scale_fill_manual using these same colors but with an alpha of course. May make it easier to differentiate overlapping bands as in selumetinib.pdf
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oh yes, I like that idea.
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Thanks @dhimmel - figures are update (e.g. Selumetinib) Going to merge! |
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The PR updates the
scripts/ras_cell_line_predictions.ipynbnotebook to update colors of Figure 3A and adds a processing step of pharmacology data.The PR also adds an R script
scripts/viz/ras_ccle_pharmacology.Rto visualize the correlations between Ras classifier score and MEK inhibitor activity in CCLE. All figures are included as well.