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Issues list

Define structure for validation report
#14 opened Jul 10, 2019 by goodb updated Jul 11, 2019
4
Question about specifying range for 'provides direct input for'
#19 opened Jul 11, 2019 by vanaukenk updated Jul 12, 2019
6
build the validation test cases
#8 opened Jul 8, 2019 by goodb updated Jul 12, 2019
@pgaudet
7
Tidy up repo and add more to README
#13 opened Jul 10, 2019 by cmungall updated Dec 12, 2019
@cmungall
1
Add located_in relation to subset of Molecular Entities to accommodate CC only annotations
#20 opened Jul 11, 2019 by vanaukenk updated Jan 17, 2020
@goodb
8
Should we Close the shapes in the schema?
#197 opened Jan 24, 2020 by goodb updated Feb 11, 2020
@goodb
19
Add ProteinContainingComplex -part_of-> AnatomicalEntity ?
#213 opened Feb 28, 2020 by dustine32 updated Mar 4, 2020
14
Handling Molecular Event - discussion
#232 opened Aug 27, 2020 by goodb updated Aug 31, 2020
6
Align with GO CAM google doc spec and paper
#7 opened Jun 24, 2019 by cmungall updated Nov 3, 2020
@goodb @lpalbou
6
Consider adding 'cell population proliferation' shape with required AE enhancement New feature or request
#226 opened May 10, 2020 by vanaukenk updated Nov 3, 2020
@vanaukenk
1
shex to json enhancement New feature or request help wanted Extra attention is needed
#128 opened Jul 27, 2019 by tmushayahama updated Nov 3, 2020
6
Decide how to handle 'incomplete' location information
#39 opened Jul 16, 2019 by vanaukenk updated Nov 3, 2020
@vanaukenk
3
Models 28, 29, 30 should be able to pass
#127 opened Jul 25, 2019 by balhoff updated Nov 3, 2020
@balhoff
3
Rename MolecularFunction to MolecularActivity
#48 opened Jul 17, 2019 by cmungall updated Nov 3, 2020
2
Add rdfs:seeAlso links between specific shapes and DOSDP yaml
#245 opened Nov 3, 2020 by cmungall updated Nov 3, 2020
@balhoff
Include shapes for models/graphs
#252 opened Nov 16, 2020 by cmungall updated Nov 17, 2020
3
Consider allowing happens_during phase at the level of the biological process
#35 opened Jul 16, 2019 by cmungall updated Nov 19, 2020
@vanaukenk
4
Remove all instances of 'directly regulates', 'directly positively regulates' and 'directly negatively regulates
#255 opened Feb 11, 2021 by pgaudet updated Feb 12, 2021
1
4
Relax constraints on has-input to allow SO sequence features
#258 opened Feb 26, 2021 by lpalbou updated Feb 26, 2021
@vanaukenk
Shex error when reporting multiple violations
#257 opened Feb 26, 2021 by lpalbou updated Feb 26, 2021
@balhoff
3
GP located_in CC error
#254 opened Jan 13, 2021 by tmushayahama updated Mar 4, 2021
5
Proposed changes to capture more information about dates in the ShEx metadata
#261 opened Jun 10, 2021 by vanaukenk updated Jun 29, 2021
@vanaukenk
12
provenance in <GoCamModel> shape question Further information is requested
#267 opened Aug 23, 2021 by balhoff updated Aug 23, 2021
@vanaukenk @kltm
2
Add two new model level annotations: “maximal-causal-chain-length” and “display-as-pathway-override”
#272 opened Jan 22, 2022 by kltm updated Jan 22, 2022
Update ShEX rules for transporter activity
#273 opened May 24, 2022 by ukemi updated May 24, 2022
1
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