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Be sure that RNAs are valid #26

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ukemi opened this issue Jul 11, 2019 · 4 comments
Closed

Be sure that RNAs are valid #26

ukemi opened this issue Jul 11, 2019 · 4 comments

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@ukemi
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ukemi commented Jul 11, 2019

Currently we have:
@ AND {
bl:category [GoGene:] ;
}// rdfs:comment "a gene (a piece of DNA with a purpose)"

But some groups annotate to RNAs using RNA central IDs. We need to make sure that these are included. Are they categorized as genes?

RNAcentral URS0000183BED_9606 URS0000183BED_9606 GO:0005615 PMID:26646931 HDA C Homo sapiens microRNA 23b (MIR23B), miRNA miRNA NCBITaxon:9606 20180319 BHF-UCL UBERON:0001969
@cmungall
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See also #31 I think the hierarchy should be

  • GeneProduct
    • ncRNA
    • Protein

@cmungall
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do we have a test case for this?

cmungall added a commit that referenced this issue Jul 17, 2019
@cmungall
improgress for #26
90f40c9
@cmungall cmungall mentioned this issue Jul 17, 2019
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@pgaudet
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pgaudet commented Jul 17, 2019

I made a ticket to create those: #50

@vanaukenk vanaukenk mentioned this issue Jan 10, 2020
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@vanaukenk
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See #173

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@cmungall @vanaukenk @pgaudet @ukemi