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NTR: inositol pyrophosphate sensor activity #27868

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ValWood opened this issue May 8, 2024 · 6 comments
Open

NTR: inositol pyrophosphate sensor activity #27868

ValWood opened this issue May 8, 2024 · 6 comments

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@ValWood
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ValWood commented May 8, 2024

Please provide as much information as you can:

  • Suggested term label:

inositol pyrophosphate sensor activity

  • Definition (free text)

Binding to and responding, e.g. by conformational change, to changes in the cellular level of an inositol pyrophosphate

  • Reference, in format PMID:#######

PMID:37949217

Abstract
"SPX domains bind to inositol pyrophosphate and modulate activities of Pi-related proteins."

Results
" The SPX domain reportedly functions as a Pi sensor and to bind signaling molecules, PP- IPs, like IP7 and IP8 (21). "

  • Gene product name and ID to be annotated to this term

initially fission yeast spx2 but potentially any SPX domain protein

https://www.pombase.org/gene_subset/interpro:IPR004331

  • Parent term(s)

GO:0140299 small molecule sensor activity

  • Synonyms (please specify, EXACT, BROAD, NARROW or RELATED)

inositol hexakisphosphate sensor (narrow)
because I think most use GO:0000822 JSON
inositol hexakisphosphate binding

  • Cross-references

  • For enzymes, please provide RHEA and/or EC numbers.

  • Can also provide MetaCyc, KEGG, Wikipedia, and other links.

  • Any other information

@ValWood
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ValWood commented May 22, 2024

+[Term]
+id: GO:0180041
+name: polyphosphate import into vacuole
+namespace: biological_process
+comment: The process in which a polyphosphate is transported across the vacuolar membrane from the cytoplasm to the vacuole. {xref="GOC:vw"}
+is_a: GO:0034486 ! vacuolar transmembrane transport
+created_by: vw
+creation_date: 2024-05-21T13:43:18Z

@pgaudet

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@ValWood

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@ValWood

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@ValWood ValWood reopened this May 24, 2024
@ValWood ValWood changed the title NTR: inositol pyrophosphate sensor NTR: inositol pyrophosphate sensor activity Jun 24, 2024
ValWood added a commit that referenced this issue Jun 24, 2024
@ValWood
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ValWood commented Jun 24, 2024

+[Term]
+id: GO:0180043
+name: inositol pyrophosphate sensor activity
+namespace: molecular_function
949217]

@ValWood
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ValWood commented Jun 27, 2024

This

+id: GO:0180043
+name: inositol pyrophosphate sensor activity
+namespace: molecular_function
949217]

did not apepar which is odd because the other changes I did at the same time were fine. Will look tomorrow...

@ValWood ValWood reopened this Jun 27, 2024
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