Update taxon constraints #740
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| name: Update taxon constraints | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 12 * * *' | |
| jobs: | |
| update: | |
| runs-on: ubuntu-latest | |
| container: obolibrary/odkfull:${{ vars.ODK_VERSION }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Work around https://github.com/peter-evans/create-pull-request/issues/1170 | |
| run: git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| - name: Update taxon constraints | |
| run: touch src/taxon_constraints/never_in_taxon.tsv src/taxon_constraints/only_in_taxon.tsv src/taxon_constraints/present_in_taxon.tsv && cd src/ontology && make imports/go_taxon_constraints.owl && cd ../.. | |
| - name: Create PR | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| title: Update taxon constraints | |
| branch: update-taxon-constraints | |
| add-paths: | | |
| src/taxon_constraints/never_in_taxon.ofn | |
| src/taxon_constraints/only_in_taxon.ofn | |
| src/taxon_constraints/present_in_taxon.ofn | |
| src/taxon_constraints/present_in_taxon_annotations.ofn | |
| src/ontology/imports/go_taxon_constraints.owl | |
| token: ${{ secrets.PR_ACTION_TOKEN }} |