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  • Allen Institute for Brain Science
  • Seattle, WA

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Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx3

Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx3

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@AllenInstitute

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  • MMSalesforceGsuite Public

    Repository for Minds Matter Seattle Salesforce Gsuite Integration code

    Jupyter Notebook 3 2 Updated May 25, 2024

  • python-task-queue Public

    Forked from seung-lab/python-task-queue

    Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.

    Python BSD 3-Clause "New" or "Revised" License Updated May 7, 2024

  • CAVEpipelines Public

    Forked from seung-lab/CAVEpipelines

    instructions for creating chunkedgraph, initial meshing, l2cache etc

    HCL Mozilla Public License 2.0 Updated May 1, 2024

  • SWC2Blender Public

    Forked from MartinPyka/SWC2Blender

    A simple SWC-file importer for Blender. This addon for Blender allows you to import files from e.g. neuromorpho.org.

    Python Updated Oct 13, 2023

  • abfload Public

    matlab fuction for reading abf files including v2.0 files

    MATLAB 19 11 BSD 2-Clause "Simplified" License Updated Jun 14, 2023

  • PCG_Reagglomerate Public

    A repo to perform python based graph agglomeration procedure for connectomics, designed to work with the PyChunkedGraph.

    Python Updated Jan 3, 2023

  • AllenSDK Public

    Forked from AllenInstitute/AllenSDK

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook Other Updated Nov 18, 2022

  • microns-nda-access Public

    Forked from cajal/microns-nda-access

    Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.

    Dockerfile GNU General Public License v3.0 Updated Aug 14, 2022

  • MicronsBudapest Public

    A repo for sharing notebooks for the microns workshop

    Jupyter Notebook Updated Jun 2, 2022

  • ProofreadingProgress Public

    Forked from seung-lab/ProofreadingProgress
    Python GNU General Public License v3.0 Updated Apr 13, 2022

  • microns_phase3_nda Public

    Forked from cajal/microns_phase3_nda

    nda schema for MICrONS phase3

    Jupyter Notebook GNU General Public License v3.0 Updated Aug 21, 2021

  • PCGL2Cache Public

    Forked from CAVEconnectome/PCGL2Cache

    Level 2 caching system for the PyChunkedGraph

    Python GNU General Public License v3.0 Updated Aug 12, 2021

  • pcg_skeleton_api Public

    web server for calculating and serving skeletons

    Python MIT License Updated Jun 2, 2021

  • dash-connectivity-viewer Public

    Forked from CAVEconnectome/dash-connectivity-viewer
    Python Updated May 28, 2021

  • cloud-volume Public

    Forked from seung-lab/cloud-volume

    A client for reading and writing Neuroglancer Precomputed volumes on cloud services.

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 3, 2021

  • sphinxtutorial Public

    a tutorial repo for learning to use sphinx for python documentation

    Python Updated Feb 2, 2021

  • charts Public

    Forked from bitnami/charts

    Helm Charts

    Smarty Other Updated Apr 29, 2020

  • pytorch-3dunet Public

    Forked from mahaling/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    Jupyter Notebook MIT License Updated Apr 18, 2020

  • chunkflow Public

    Forked from seung-lab/chunkflow

    Compose chunk operators to create pipeline for distributed computation

    Python Apache License 2.0 Updated Apr 15, 2020

  • render-deploy Public

    repo for docker-compose deployment of render stack

    4 1 MIT License Updated Jan 28, 2020

  • kubernetes-ingress-controller Public

    Forked from Kong/kubernetes-ingress-controller

    Kong for Kubernetes

    Go Apache License 2.0 Updated Dec 6, 2019

  • EMBinder Public

    a test of producing a binder with access to minnie data

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Nov 22, 2019

  • DracoPy Public

    Forked from seung-lab/DracoPy

    Python wrapper for Google's Draco mesh compression library

    Python Apache License 2.0 Updated Oct 16, 2019

  • scipy Public

    Forked from scipy/scipy

    Scipy library main repository

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Oct 4, 2019

  • SWDB_2019-1 Public

    Forked from AllenInstitute/SWDB_2019

    Repository for course materials for the Summer Workshop on the Dynamic Brain 2019

    Jupyter Notebook Other Updated Aug 23, 2019

  • SWDB_2019 Public

    Repository for course materials for the Summer Workshop on the Dynamic Brain 2019

    Jupyter Notebook Other Updated Aug 20, 2019

  • vtkplotter Public

    Forked from marcomusy/vedo

    A python class for scientific visualization of 3D objects with VTK

    Python 1 1 MIT License Updated Jul 17, 2019

  • neuronex2019 Public

    repo for neuronex workshop

    Jupyter Notebook 1 BSD 2-Clause "Simplified" License Updated Jun 4, 2019

  • neuroglancer Public

    Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    TypeScript Apache License 2.0 Updated Jun 1, 2019

  • gamer Public

    Forked from mcellteam/gamer-v1

    Geometry-preserving Adaptive Mesh Generator

    C++ GNU General Public License v2.0 Updated Apr 28, 2019