Set lower bounds for supported dependency versions

Follow NEP29 and set lower bounds for the dependencies (all minor
versions from the last 2 years). The only exception is xrft, which is
new and likely requires v1.0 to work with Harmonica. Setup CI to run on
lowest Python with lowest dependencies, highest Python with highest
dependencies, and highest Python with optional dependencies. Use
Dependente to extract the version information from setup.cfg instead of
the custom export tool we had.

.github/workflows/docs.yml

@@ -71,25 +71,25 @@ jobs:
  # Needed for caching
  use-only-tar-bz2: true
 
- - name: Collect requirements - run-time
- run: python tools/export_requirements.py > requirements-full.txt
-
- - name: Collect requirements - other
+ - name: Collect requirements
  run: |
+ echo "Install Dependente to capture dependencies:"
+ mamba install dependente==0.1.0 -c conda-forge
+ echo ""
+ echo "Capturing run-time dependencies:"
+ dependente --source install > requirements-full.txt
  echo "Capturing dependencies from:"
  for requirement in $REQUIREMENTS
  do
  echo " $requirement"
  cat $requirement >> requirements-full.txt
  done
-
- - name: List requirements
- run: |
+ echo ""
  echo "Collected dependencies:"
  cat requirements-full.txt
 
  - name: Setup caching for conda packages
- uses: actions/cache@v2
+ uses: actions/cache@v3
  with:
  path: ~/conda_pkgs_dir
  key: conda-${{ runner.os }}-${{ env.PYTHON }}-${{ hashFiles('requirements-full.txt') }}

.github/workflows/test.yml

@@ -38,13 +38,19 @@ jobs:
  - ubuntu
  - macos
  - windows
- python:
- - "3.7"
- - "3.9"
  dependencies:
+ - oldest
  - latest
+ - optional
+ include:
+ - dependencies: oldest
+ python: "3.7"
+ - dependencies: latest
+ python: "3.9"
+ - dependencies: optional
+ python: "3.9"
  env:
- REQUIREMENTS: env/requirements-tests.txt
+ REQUIREMENTS: env/requirements-build.txt env/requirements-tests.txt
  # Used to tag codecov submissions
  OS: ${{ matrix.os }}
  PYTHON: ${{ matrix.python }}
@@ -81,39 +87,42 @@ jobs:
  with:
  python-version: ${{ matrix.python }}
 
- - name: Collect requirements - run-time
- run: python tools/export_requirements.py > requirements-full.txt
-
- - name: Collect requirements - other
+ - name: Collect requirements
  run: |
+ echo "Install Dependente to capture dependencies:"
+ python -m pip install dependente==0.1.0
+ echo ""
+ echo "Capturing run-time dependencies:"
+ if [[ "${{ matrix.dependencies }}" == "oldest" ]]; then
+ dependente --source install --oldest > requirements-full.txt
+ elif [[ "${{ matrix.dependencies }}" == "optional" ]]; then
+ dependente --source install,extras > requirements-full.txt
+ else
+ dependente --source install > requirements-full.txt
+ fi
  echo "Capturing dependencies from:"
  for requirement in $REQUIREMENTS
  do
  echo " $requirement"
  cat $requirement >> requirements-full.txt
  done
-
- - name: List requirements
- run: |
+ echo ""
  echo "Collected dependencies:"
  cat requirements-full.txt
 
  - name: Get the pip cache folder
  id: pip-cache
  run: |
- echo "::set-output name=dir::$(pip cache dir)"
+ echo "dir="$(pip cache dir) >> $GITHUB_OUTPUT
 
  - name: Setup caching for pip packages
- uses: actions/cache@v2
+ uses: actions/cache@v3
  with:
  path: ${{ steps.pip-cache.outputs.dir }}
  key: ${{ runner.os }}-pip-${{ hashFiles('requirements-full.txt') }}
 
  - name: Install requirements
  run: |
- # Install the build requirements before anything else so pip can use
- # wheels for other packages.
- python -m pip install --requirement env/requirements-build.txt
  python -m pip install --requirement requirements-full.txt
 
  - name: Build source and wheel distributions

setup.cfg

@@ -39,19 +39,19 @@ include_package_data = True
 packages = find:
 python_requires = >=3.7
 install_requires =
- numpy
- pandas
- scipy
- scikit-learn
- numba
- pooch>=0.7.0
- xarray
- verde>=1.5.0
- xrft
+ numpy>=1.19
+ pandas>=1.1
+ scipy>=1.5
+ scikit-learn>=0.24
+ numba>=0.52
+ pooch>=1.2
+ xarray>=0.16
+ verde>=1.5
+ xrft>=1.0
 
 [options.extras_require]
 visualizations =
- pyvista
+ pyvista>=0.27
  vtk>=9
 
 [options.package_data]