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  1. Plethodonkentucki_RangeLimits Plethodonkentucki_RangeLimits Public

    This repository contains the files associated with Watts et al. 2024. Hard edges, soft edges, and species range evolution: A genomic analysis of the Cumberland Plateau salamander *in review*

    R 1

  2. Plethodonkentucki_SpeciesDelimitation Plethodonkentucki_SpeciesDelimitation Public

    This repository contains the files associated with Watts et al. 2024. Cryptic Species within a Cryptic Species? Species Delimitation in the Cumberland Plateau Salamander, Plethodon kentucki. Herpet…

    R

  3. LRP_Troubleshooting LRP_Troubleshooting Public

    learning LRP pipeline & troubleshooting automation

    Python

  4. GenomeBrowserTest GenomeBrowserTest Public

    This repository is for testing the UCSC Genome Browser site with POGO-generated data and data that already exists in Genome Browser.

  5. PoGo2GenomeBrowser PoGo2GenomeBrowser Public

    This repository is for taking corrected.GTF files and refined.FASTA files (from the Long Read Proteogenomics pipeline) and a dataframe of Peptides all the way to the UCSC Genome Browser

    Python

  6. drought_index drought_index Public

    Using Riffomonas' tutorial project to practice reproducible research practices with drought data

    Python