Merge pull request #474 from deeptools/develop

Release 3.19

Merge pull request #424 from deeptools/develop

Release 3.8

Merge pull request #386 from deeptools/develop

Release 3.7

Merge pull request #315 from deeptools/develop

Release 3.6

Update version 3.5.1 (#290)

* remove constrain on openblas

* add message if bedtools is not installed.

* overcome potential other error

* Test tabix independently of extension

* modify get_scores to reach end_region

* linting

* mention installation of BEDTools in the doc

* update the requirements in the doc

* Highlight BEDTools as external dependency

* raise an error when BEDTools is not installed

* use one more log in utilities

* copy the expected pdf before compare_images

* linting

* add line if FAQ regarding hicmatrix14

* fix broken link in all properties table

* update installation doc

* change error to warning

* update version of HiCMatrix

* update version

* copy the bug fix line of hicexplorer to pgt

Co-authored-by: Joachim Wolff <[email protected]>

Merge pull request #269 from deeptools/develop

PGT 3.5

Merge pull request #229 from deeptools/develop

[WIP] Release 3.4

Merge pull request #194 from deeptools/develop

[WIP] release 3.3

Merge pull request #159 from lldelisle/moreAutomatisationInREADME

bash script to update the README

Merge pull request #149 from deeptools/develop

3.2 release of pgt