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Some help page changes #123

Merged
merged 5 commits into from
Dec 8, 2015
Merged

Some help page changes #123

merged 5 commits into from
Dec 8, 2015

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asrichter
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adjusted help pages
added templates for --MNase option to bamCoverage.py and --extendReads option to parserCommon.py including help messages, but options still require implementation by Fidel

@dpryan79
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dpryan79 commented Dec 8, 2015

Removing the --fragmentLength option breaks things. I assume that was a mistake and that you just wanted the documentation changed. Let me know what changes you wanted there and I'll fix the build.

@dpryan79 dpryan79 added the WIP label Dec 8, 2015
fidelram added a commit that referenced this pull request Dec 8, 2015
Some help page changes plus the option --fragmentLength as removed and --extendPairedEnds is now called --extendReads. This options accepts a fragment length as parameter.
@fidelram fidelram merged commit c27b16b into release-1.6 Dec 8, 2015
@asrichter asrichter deleted the changes_andreas branch December 8, 2015 15:04
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3 participants