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NIMS 1.1 #106

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merged 5 commits into from
Jan 5, 2015
Merged

NIMS 1.1 #106

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537e841
adapt nims1 to use nimsdata2
kevlarkevin Sep 24, 2014
efe5f3a
adapt sorter and processors for tgz datasets
kevlarkevin Nov 6, 2014
a1421c7
add upload route
Sep 30, 2014
7e171b5
adds update guide, tmux startup scripts and config
kevlarkevin Dec 10, 2014
a87c567
processor updates some Epoch metadata after recon
kevlarkevin Dec 16, 2014
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processor updates some Epoch metadata after recon 
- closes #26
  • Loading branch information
@kevlarkevin
kevlarkevin committed Jan 5, 2015
commit a87c567ae005a0dae5bb907963a01f0d8c242ae4
10 changes: 10 additions & 0 deletions nimsproc/processor.py
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Expand Up @@ -294,6 +294,11 @@ def process(self):
DBSession.add(self.job.data_container)
conv_ds.kind = u'derived'
conv_ds.container = self.job.data_container
conv_ds.container.size = dcm_acq.size
conv_ds.container.mm_per_vox = dcm_acq.mm_per_vox
conv_ds.container.num_slices = dcm_acq.num_slices
conv_ds.container.num_timepoints = dcm_acq.num_timepoints
conv_ds.container.duration = dcm_acq.duration
filenames = []
for f in outputdir_list:
filenames.append(f)
Expand Down Expand Up @@ -438,6 +443,11 @@ def process(self):
DBSession.add(self.job.data_container)
dataset.kind = u'derived'
dataset.container = self.job.data_container
dataset.container.size = pf.size
dataset.container.mm_per_vox = pf.mm_per_vox
dataset.container.num_slices = pf.num_slices
dataset.container.num_timepoints = pf.num_timepoints
dataset.container.duration = pf.duration
filenames = []
for f in outputdir_list:
filenames.append(f)
Expand Down