De novo assembly from Oxford Nanopore reads.

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Exphormer: Sparse Transformer for Graphs

The code behind the Sol Genomics Network, Cassavabase and BreeDBase websites

A package for making tree-based visualizations for embedding vectors

Locally run an Instruction-Tuned Chat-Style LLM

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http:https://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

Analysis tool for Nanopore sequencing data