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XMLDict implements a simple Associative interface for XML documents.
Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions in prokaryotic sequences
Use command-line Git in your Julia packages
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
A collection of resources for Deep Learning in Python for Life Sciences (with focus on biotech and pharma).
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
Listing of papers about machine learning for proteins.
Implementation of Alphafold 3 in Pytorch
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Tidier text analysis in Julia, modeled after the tidytext R package.
Tidier database analysis in Julia, modeled after the dbplyr R package.