cloc counts blank lines, comment lines, and physical lines of source code in many programming languages.

⚡ ♒ Rapid prokaryotic genome annotation

✂️ ⚡ Rapid haploid variant calling and core genome alignment

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Core BioPerl 1.x code

NOVOPlasty - The organelle assembler and heteroplasmy caller

A minimap2 frontend for PacBio native data formats

🌳 Create a tree using Mash distances

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

A Circos-based tool to visualize genome assembly consistency

A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline

Versatile simulator for structural variance and Nanopore/PacBio sequencing reads

Convert a Genbank flat file to an NCBI ptt file

PanGenomePipeline

Analysis of protein coding exons in single molecule assemblies

Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file

PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.