Graphs for Everyone

OpenRefine is a free, open source power tool for working with messy data and improving it

The Metadata Platform for your Data Stack

Apache Iceberg

JanusGraph: an open-source, distributed graph database

TypeDB: the polymorphic database powered by types

Apache TinkerPop - a graph computing framework

Nessie: Transactional Catalog for Data Lakes with Git-like semantics

Graph+Semantics: Import/Export RDF from Neo4j. SHACL Validation, Model mapping and more.... If you like it, please ★ ⇧

Genetic circuit design automation

YAGO is a large semantic knowledge base, derived from Wikipedia, WordNet, WikiData, GeoNames, and other data sources

The webprotege code base

The premier open source Data Quality solution

A quality control analysis tool for high throughput sequencing data

Automatically exported from code.google.com/p/figtree

RTG Tools: Utilities for accurate VCF comparison and manipulation

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A Neo4j backed ontology store

Text Only Genome Viewer!

Mining CRISPRs in Environmental Datasets

MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities

Crop Planning Software for Small Farms and Serious Gardeners

Basic and Advanced OBO Graphs: specification and reference implementation

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology M…

RTG Core: Software for alignment and analysis of next-gen sequencing data.

Analysis tool for Nanopore sequencing data

Ontologizer is a tool for identifying enriched Gene Ontology terms in lists of names of genes or gene products.