A Julia-based framework for molecular modelling

Statically sized arrays for Julia

Robust individual and aggregate checksums for nucleotide sequences

Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

A massively parallel, high-level programming language

Long read production pipelines

finally fast julia scripts

De novo assembly from Oxford Nanopore reads.

de novo sequence assembler using string graphs

Probabilistic data structures in Julia

Automated knowledge graph creation SDK

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

pbsv - PacBio structural variant (SV) calling and analysis tools

A minimap2 frontend for PacBio native data formats

Spatial data indexing in pure Julia (R*-trees etc)

Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Des…

Fast and accurately polish the genome generated by long reads.

Fast and accurate de novo assembler for long reads

LLM-driven curation assist tool (pre-alpha)

🧬 gget enables efficient querying of genomic reference databases

WAIC and PSIS model comparison methods as explained in Statistical Rethinking.

Exploratory analysis of Bayesian models with Julia

Sequences basics

Logan Unitigs and Contigs

Julia library for compositional construction of SQL queries

Code for "correcting" BioSample records

An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.

Metaprogramming tools for DataFrames