Changed

• Use aset instead of aset-* for performance #286
• Misc performance tuning for cljam.algo.depth #287
• Disable :missing-docstring linter for test code #288
• Use ByteBuffer wrapper instead of LSB protocol #290
• Rewrite TwoBitWriter using FileChannel and ByteBuffer #291
• Replace remaining LSB protocol implementations with ordinary functions #293
• Remove nth's linear search overhead in BCF reader #294

Fixed

• Fix/apply lint #269
• Fix/vcf float case insensitive #272
• Fix/additional coding style #279
• Fix/shadowing var #281
• Fix/add doc string #282
• Remove extra parens around static field references #300
• Update dependencies #310

Added

• Add function for unphasing genotypes #275
• Support explicit first phasing indicator for VCF genotypes #276
• Add validator for writing vcf. #277
• Add validator for writing sam. #278
• Implementing rANS4x8 decoder toward CRAM support #297
• Add CRAM reader (alpha) #302
• Misc performance improvements for CRAM reader #304
• Index-based random access for CRAM reader #306
• Support reading CRAM files with embedded references #307
• Automatic read name generation for CRAM records #308
• Support for CRAM beta coding #309
• Support for reading alignments in specific region without CRAI index file #311

Full Changelog: 0.8.4...0.8.5