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A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were pr…

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An unidentifiable mechanism that helps you bypass GFW.

A Minimalist Web Framework for R

VS Code in the browser

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Pair-wise conditional analysis and colocalisation

Illustrative R-code used in publications.

Repository containing the R-code used in analyses for publications.

A Python Package for PheWAS Execution, Visualization, and Analysis

A Python Package for Mendelian Randomization Analysis

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

A generative model for programmable protein design

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

Ubuntu image with SSH & SFTP

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

Papers with code for single cell related papers

Accurate and fast cell marker gene identification with COSG

Surface Marker Detection Using Single Cell Data

R package containing the Cerebro application.

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma