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TimiGP20231223 Public
Forked from CSkylarL/TimiGPAn R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.
R GNU General Public License v3.0 UpdatedDec 11, 2023 -
chroma Public
Forked from generatebio/chromaA generative model for programmable protein design
Python Apache License 2.0 UpdatedNov 28, 2023 -
BrCa_cell_atlas Public
Forked from Swarbricklab-code/BrCa_cell_atlasData processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
R UpdatedOct 12, 2023 -
paper-code Public
Forked from strengejacke/paper-codeRepository containing the R-code used in analyses for publications.
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TOmicsVis Public
Forked from benben-miao/TOmicsVisTranscriptomics Visualization R package.
R Other UpdatedJul 23, 2023 -
seurat-wrappers Public
Forked from satijalab/seurat-wrappersCommunity-provided extensions to Seurat
R GNU General Public License v3.0 UpdatedJul 20, 2023 -
ColabFold Public
Forked from sokrypton/ColabFoldMaking Protein folding accessible to all!
Jupyter Notebook MIT License UpdatedJul 20, 2023 -
MSofTimiGP Public
Forked from CSkylarL/MSofTimiGPThis includes all codes used in TimiGP manuscript
HTML GNU General Public License v3.0 UpdatedJul 18, 2023 -
single-cell-papers-with-code Public
Forked from genecell/single-cell-papers-with-codePapers with code for single cell related papers
UpdatedJul 14, 2023 -
EPIC Public
Forked from GfellerLab/EPICRepository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
R Other UpdatedJul 12, 2023 -
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
R GNU General Public License v3.0 UpdatedJul 1, 2023 -
singlet Public
Forked from zdebruine/singletSingle-cell analysis with non-negative matrix factorization
C++ UpdatedJun 22, 2023 -
gpt_academic Public
Forked from binary-husky/gpt_academic为ChatGPT/GLM提供图形交互界面,特别优化论文阅读润色体验,模块化设计支持自定义快捷按钮&函数插件,支持代码块表格显示,Tex公式双显示,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持清华chatglm等本地模型。兼容复旦MOSS, llama, rwkv, 盘古, newbing, claude等
Python GNU General Public License v3.0 UpdatedJun 15, 2023 -
docs.hpc.sjtu.edu.cn Public
Forked from SJTU-HPC/docs.hpc.sjtu.edu.cnSJTU HPC 用户文档站点
TeX Other UpdatedMay 22, 2023 -
bc_osc_jupyter Public
Forked from OSC/bc_osc_jupyterBatch Connect - OSC Jupyter Notebook Server
HTML MIT License UpdatedMay 15, 2023 -
hpc-toolset-tutorial Public
Forked from ubccr/hpc-toolset-tutorialTutorial for installing Open XDMoD, OnDemand, & ColdFront
Jupyter Notebook GNU General Public License v3.0 UpdatedMay 5, 2023 -
SCP Public
Forked from zhanghao-njmu/SCPSCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
R GNU General Public License v3.0 UpdatedApr 27, 2023 -
simplifyEnrichment Public
Forked from jokergoo/simplifyEnrichmentSimplify functional enrichment results
R Other UpdatedApr 20, 2023 -
scMetabolism Public
Forked from wu-yc/scMetabolismQuantifying metabolism activity at the single-cell resolution
R BSD 3-Clause "New" or "Revised" License UpdatedApr 19, 2023 -
velocyto.R Public
Forked from velocyto-team/velocyto.RRNA velocity estimation in R
R UpdatedApr 5, 2023 -
BS831 Public
Forked from montilab/BS831Course Materials for Genomics Data Mining
HTML GNU General Public License v3.0 UpdatedApr 5, 2023 -
seurat-data Public
Forked from satijalab/seurat-dataDataset distribution for Seurat
R GNU General Public License v3.0 UpdatedMar 21, 2023 -
paper-code1 Public
Forked from palryalen/paper-codeIllustrative R-code used in publications.
R UpdatedMar 8, 2023 -
AtacWorks Public
Forked from cjnolet/AtacWorksDeep learning based processing of Atac-seq data
Jupyter Notebook Other UpdatedFeb 16, 2023 -
rapids-single-cell-examples Public
Forked from NVIDIA-Genomics-Research/rapids-single-cell-examplesExamples of single-cell genomic analysis accelerated with RAPIDS
Jupyter Notebook Apache License 2.0 UpdatedFeb 14, 2023 -
luca Public
Forked from icbi-lab/lucaSingle-cell Lung Cancer Atlas with 1.2M cells
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 12, 2023 -
NCOMMS_NSCLC_scFibs Public
Forked from cjh-lab/NCOMMS_NSCLC_scFibsCode Associated with the Nature Communications Publication entitled "Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer"
R UpdatedJan 3, 2023 -
ood-compose Public
Forked from vsoch/ood-composeDocker compose to bring up Open OnDemand with SLURM, Centos 7
Shell MIT License UpdatedSep 14, 2022 -
NGCHMR Public
Forked from bmbroom/NGCHMRAn R library for creating Next-Generation Clustered Heat Maps (NG-CHM)
R UpdatedApr 8, 2022 -
infercnvNGCHM Public
Forked from broadinstitute/infercnvNGCHMinferCNV interface to using NGCHM next generation heat maps
R Other UpdatedJul 19, 2021