Skip to content

Issues: broadinstitute/viral-ngs

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

52 Open 188 Closed
52 Open 188 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

intrahost.py and vphaser errors
#1012 opened Nov 8, 2023 by elasekness
Can viral-ngs detect virus integration?
#1011 opened Jul 10, 2023 by DAWNkKim
1
viral-ngs end to end execution tutorial for viral metagenomics
#1009 opened Jul 10, 2020 by amirshams84
expose fastq_to_bam via WDL
#1001 opened Feb 5, 2020 by tomkinsc
add bbmap tools and allow for clumpify-based dedup of unaligned reads
#968 opened Jun 28, 2019 by tomkinsc
3
Changes spades default mode from rna to meta
#966 opened Jun 14, 2019 by yesimon
@notestaff
1
add dustmasker as tool
#962 opened Jun 11, 2019 by tomkinsc
@yesimon
1
ditch py2
#930 opened Feb 22, 2019 by dpark01
add support for / switch default dbs to zstd
#929 opened Feb 20, 2019 by dpark01
WDL workflow: ensure numeric segment ordering for genbank feature tables in multi-segment genomes
#885 opened Sep 14, 2018 by tomkinsc
wrap conda builds with retry loop
#882 opened Aug 24, 2018 by tomkinsc
add length threshold to metagenomics.py::assemble_spades enhancement
#874 opened Jul 31, 2018 by tomkinsc
@notestaff
rnaSPAdes sometimes does not emit transcripts.fasta
#859 opened Jul 23, 2018 by dpark01
@notestaff
1
update and test Cromwell 32 with Google PAPI v2
#843 opened Jul 10, 2018 by dpark01
2
update WDL from draft-2 spec to v1.0
#837 opened Jul 5, 2018 by tomkinsc
5
Cromwell workflow engine support
#825 opened Jun 21, 2018 by tom-dyar
7
alter kraken.py pipeline() and classify() to tolerate single-end reads
#820 opened Jun 5, 2018 by tomkinsc
VPHASER 2 for single-end reads?
#813 opened May 4, 2018 by aglorias
from human depletion databases, mask any sequence similar to viral or bacterial
#805 opened Mar 29, 2018 by notestaff
@notestaff
1
add step to break up misassemblies in de novo contigs bug
#804 opened Mar 29, 2018 by notestaff
@notestaff
5
VPhaser output intepretation - strand bias p value
#789 opened Feb 9, 2018 by cromozome
3
Add automated blastx-like LCA of post-spades contigs to demux_plus.wdl
#784 opened Feb 6, 2018 by dpark01
@tomkinsc
1
Change krona wrapper to read from summary report instead of read report
#777 opened Jan 31, 2018 by dpark01
8
use *.bam intermediary files rather than *.sam
#763 opened Jan 25, 2018 by tomkinsc
2
snakemake pipeline viral genome pipe
#749 opened Jan 3, 2018 by jb013b
2
ProTip! Adding no:label will show everything without a label.